BAC Information

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BAC

Clone NameMSMg01-106N23
Chromosome1 (Build37)
Map Location 105,634,973 - 105,635,749
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041067
Downstream geneLOC383546, LOC100041134
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-106N23.T7 (MSMg01no106_n23.b1)MSMg01-106N23.TJ (MSMg01no106_n23.g1)
ACCAG320840AG320841
length1,2121,262
length of high quality
(start - end)		768 (87 - 854)597 (130 - 726)
definitionCHROMAT_FILE: MSMg01no106_n23.b1 PHD_FILE: MSMg01no106_n23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:07:55 2005CHROMAT_FILE: MSMg01no106_n23.g1 PHD_FILE: MSMg01no106_n23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:07:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCATTCCTNNNNTTATCAATGGGCGCTAXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCTAAGGATTTATCCCTCCCTTTGAATGACAAGATCTGTC
AACTGAGCAACATACCAATACCAAGACTTCAATTTTCACTCACATGTATT
TACATATCACTTTCCCACTACTCCTTATTTTGTTACTAATAGGCAATGTT
AGTCACAGATTGCAAACAGCACGTATATTCAAATTAATGGTTTTTATTGC
CTTTGAAAGTATATGTTTGGTATAGTTCACAAACTTTTGCATACTCAAGC
ATCCAAATAAATGCATATATATATTTAATGAATGATTGCCTTGCTGCATT
GACACCATTAAAACTTGCAGTAACTGGATCAAAATGCACTTAAATAGTGA
TATACGCAGATAGAGAGATTGACTTGGTACCAAATTATATTTTTCGTATG
CAAAATGCAAGACCGAGATCAGAGATTCAAGTATACTGCATAGACTTTGT
ATGAAGCACAGTTTCTTCATTTTTATTTTTGACAGTGTTCATCTGAAGTT
TGAGAAATATGGAAATTATGATTTATTTTATGTAAATTAAAGGGTCCTGA
ATATAAGTATTTTATTAATTCAAAACTTTTATTTTTTCTGATTGTGTTAT
TTTATTTTATAAAAGTTTTGCAATTCCGTATATATGAGATAACATGTATG
CAGATGATTCATAGATATATGTATAGGAAATACTGTTTGGATGATAAACT
ATTCATGTGCAACTCAGCCTGAATCCATACTCTTACTCATTCTACTTCAT
AGACATAGTCTTTATTTACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCNCTCNCNCNCTCTCTCTCTCTCTCTGTGTGTGTGTTTGTGA
CTGTGTGTGTGGTGTTTTTTATGTACAGGTTTTGAACATAAATCCCTGGT
GTAATTTTATAAAATAATTGCTTGGATGGTTTAAAAAATTACCCAATTTA
TCCCCAACCCATCTTTATTTTTTTAAGACCTGCTTAACTTTATCCTTATA
TTTTCCCGATGTCAATTTTTCTTGGTCCTACCCCTCTAAAACCCTCTTGT
TTCTCCTTTTATTCCTCTATTTCTTCTTGTAATTTGATTTTATCTGTTCT
GCTGGATTTTATTACTATTTATTCCACTCCTTCTTTTCTTGAAAAATCAT
TTTTTTGTTCTG

NNTTCAAGTATTTNTNCACACATGGCATGCTGGXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTCTTAAACCTGATAAACA
GCTTTGGTGAAGTAGCTGGATACCTTTATTAACTCAAACAAGTCAATGGC
NCTTTCTCTACACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACC
ACACCGTTCTCAATAGTCACAAATAATATAAAATATCTCGGCGTGACTCT
AACTAAGGAAGTAAAAGATCTGTATGATAAAAACTTCAAGTCTCTGAAGA
AAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATGG
ATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTA
CAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAACGAAT
TAGAAGGAGCAATTTGCAAATTCATCTGGAATAACAAAAAACCTAGGATA
GCAAAAACTCTTCTCAAGGATAAAAGAACCTCTGGTGGAATCACCATGCC
TGACCTAAAGCTTTACTACAGGGCAATTGTGATAAAAACTGCATGGTACT
GGTATAGAGACAGACAAGTAGACCAATGGAATAGAATTGAAGACCCAGAA
ATGAACCCACACACCTATGGTCATTTGATCTTCGACAAGGCAGCTAAAAC
CATCCAGTGTAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACT
GGTTGTTATCATGTATAAGAATGCGAATCGATCCATACTTACCTCCTTGT
ACTAAGGTCAAATCTAATTGGATCAAGGAACTTCACTTAATACCAGAGAC
ACTGAAACTTATTAGAGGAGAAAGTGGGGGAAAAGCCCTTGAAAAAATGG
GTACAGGGGAAAGAATCCTGAACAGAACATCATGGGCTTGGCTCTGGTAA
AATCGAGATATTGAAAAATGGGAACCTAATTGAAAACTCCAAAGTTTCTG
GCCAGGTAAAAAAACCCCCGTTCAATTAGGACAAAAAAAGACCCCCCCAC
CAAAATTGGGGAAAAAGGATCTTTAACCTTATCTCCAAAATTCCAATAGG
GGGCACCTAAAATTCCCCCCTCTATTTATATAGAAACCTCCTGAAAGGGG
GGGAACTTTTCCAAAAATATCTAAATAATCCCCTCCCTTTATATAAAATG
GGGGCTCTTCCTAAAACTGAATNACACAATAATTTCTCTTCCCCTTTAAG
AGAATAATCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no106_n23.b1 MSMg01no106_n23.b1 CHROMAT_FILE:
MSMg01no106_n23.b1 PHD_FILE: MSMg01no106_n23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:07:55 2005
         (768 letters)



>mm_chr1_105634809_105635985
          Length = 1177

 Score = 1324 bits (685), Expect = 0.0
 Identities = 752/777 (96%), Gaps = 9/777 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgacaagatctgtcaactgagcaacataccaataccaagacttcaattttcactcacatg 60
           |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 941 tgacaagatctgtcaactgagcaacataccaataccaagactacaattttcattcacatg 882

                                                                       
Query: 61  tatttacatatcactttcccactactccttattttgttactaataggcaatgttagtcac 120
           |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct: 881 tatttacatatcactttcccactactccttattttgttactattaggcaatgttagacac 822

                                                                       
Query: 121 agattgcaaacagcacgtatattcaaattaatggtttttattgcctttgaaagtatatgt 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 agaatgcaaacagcacgtatattcaaattaatggtttttattgcctttgaaagtatatgt 762

                                                                       
Query: 181 ttggtatagttcacaaacttttgcatactcaagcatccaaata-a-atgc--atatatat 236
           ||||||| |||||||||||||||||| |||||||||||||||| | || |  ||||||||
Sbjct: 761 ttggtatggttcacaaacttttgcatgctcaagcatccaaatatatatacatatatatat 702

                                                                       
Query: 237 atttaatgaatgattgccttgctgcattgacaccattaaaacttgcagtaactggatcaa 296
           |||||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 701 atttaatgaatgattgtcttgctgcattaacaccattaaaatttgcagtaactggatcaa 642

                                                                       
Query: 297 aatgcacttaaatagtgatatacgcagatagagagattgacttggtaccaaattatattt 356
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 641 aatgcacttaaatagtgatatatgcagatagagagattgacttggtaccaaattatattt 582

                                                                       
Query: 357 ttcgtatgcaaaatgcaagaccgagatcagagattcaagtatactgcatagactttgtat 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 ttcgtatgcaaaatgcaagaccgagatcagagattcaagtatactgcatagactttgtat 522

                                                                       
Query: 417 gaagcacagtttcttcatttttatttttgacagtgttcatctgaagtttgagaaatatgg 476
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gaagcacagtttcttcattttcatttttgacagtgttcatctgaagtttgagaaatatgg 462

                                                                       
Query: 477 aaattatgatttattttatgtaaattaaagggtcctgaatataagta-ttttattaattc 535
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 461 aaattatgatttattttatgtaaattaaagggtcctgaatataagtatttttattaattc 402

                                                                       
Query: 536 aaaacttttattttttctgattgtgttattttattttataaaagttttgcaattccgtat 595
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct: 401 aaaacttttattttttctgattgtgttattttattttataaaagttttgcaattatgtat 342

                                                                       
Query: 596 atatgagataacatgtatgcagatgattcatagatatatgtataggaaatactgtttgga 655
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 atatgagataacatgtatgcagatgattcatagatatatgtataggaaatactgtttgga 282

                                                                       
Query: 656 tgataaactattcatgtgcaactcagcctga----atccatactcttactcattctactt 711
           |||||||||||||||||||||||||||||||    |||||||||||||||||||||||||
Sbjct: 281 tgataaactattcatgtgcaactcagcctgaatccatccatactcttactcattctactt 222

                                                                    
Query: 712 catagacatagtctttatttactctctctctctctctctctctctctctctctctct 768
           |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 221 catagacatagtctttatttactctctctctctctccctctctctctctctctctct 165


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 64
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 768
Length of database: 1177
Length adjustment: 10
Effective length of query: 758
Effective length of database: 1167
Effective search space:   884586
Effective search space used:   884586
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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