BAC Information

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BAC

Clone NameMSMg01-106O14
Chromosome1 (Build37)
Map Location 45,490,873 - 45,491,204
singlet/doubletsinglet
Overlap geneCol5a2
Upstream geneTxn-ps1, Gulp1, LOC100041738, LOC100041752, LOC383640, Col3a1
Downstream geneEG666799, LOC631429, LOC666814, EG666819, Wdr75, EG433297, LOC383644, Slc40a1, LOC670603, EG227054, LOC100042453, EG212225, Dnahc7b, LOC666855
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-106O14.T7 (MSMg01no106_o14.b1)MSMg01-106O14.TJ (MSMg01no106_o14.g1)
ACCAG320869AG320870
length1,2951,271
length of high quality
(start - end)
619 (89 - 707)526 (130 - 655)
definitionCHROMAT_FILE: MSMg01no106_o14.b1 PHD_FILE: MSMg01no106_o14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:08:00 2005CHROMAT_FILE: MSMg01no106_o14.g1 PHD_FILE: MSMg01no106_o14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:08:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATATTATNTNNAACATTTCGGCGCTAXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCATGGAGCAGCCAGCAACCCTTTAATAGACTTCTAGCCA
TGCTGCTTTTGTGAGCTTTCCTACATGCTGCAGCGAGCAGTGTGATGATA
CAGTTGCCTTTAGGCCATCCATGCACATGTCAGTAATCTTAAATGATGTT
TTTGTATGTAATTTTAATACAACCATTGGCTCTTCAAGTGGAATTTCAGT
AAAATCTTTCTTTGGTCTTATACATTTCAGATGTTATCCCCTTTCCTGGT
CTCCACTCCAGAAACCTGATATCCCATCCTCCCTCCCCCCTGCTTCTCTG
AGGGTGCTCACCCTTCTACCCACCCACTTCAACTCCCTGCACTGGCATTC
CCCTACACTGGAGCAACAAGCCTTCCCAGGACCAAGGGCATCTTCTCCCA
TTGAAGTCTGATAAGGCCATCCTCTGCTACTTATGCAGCTGGAGCCATGG
GTCCCTCCATGTGTACTCTTTGGTTGGTGGTTTAGTTCCTGGGAGCTCTG
AGGGGTTTTGGTTGGTTGATATTGTTATTCTTTCTATGGATTACAAACCT
CTTCAGCTCCTTCAGTCCTTTCTCTAGCTACTCCATTGGGGACCCTTTGG
TCAGGTCCAGTGGTTGGCTGTGAGCATCCCCTCTCTATTTGCCAGGTTCT
AGCATAGTCTCAGAAGACAGCTATATCAGGATCCTGTCAGCAAGCACTTC
TTGGCATCCACAATAAAGTCTAGGTTTGGTGTCTGTATATGGGATGGATC
CCCCGGTGGGTCAATCTCTGGAATGGCCTTTCCTTTAATGCTCCACACTT
TCAGTATTTCCTCCCATGATTATTTTTGTTCCCCCTTCTAAAAAGGACTG
AAACCTCCCCCCCTTTTGGCCTTCCTTTCTTGAAAATTCCCATTGGCCTG
TGAATATGTAACCTTGGGTAATTTCCAAGCTTTTCAGGCTAATATTCCCC
TTTAATCTCCGAAACCCCCCTTTGAAAATTAATAAAAAATCCTGGTTCAT
GTTCTTCCCCCAAAAATAAGTTTATATAATTTCATCTCAATGTCCAAAAA
GTGGGTGTTTGCACAAAAACCCTATAAAATTGTTTTTGTTAAAAAAACCC
ATTTGTTATTGATATAAATCTTCTGGGTCCAACATTAAATAACCTCCTCT
TCCTCTAAAAAATATNTAAATTTTATTAAATAGGTCAAAATTTTAATTNT
TTTGTTGTGTCTATATATGTCAATAGTGTGTACTCCTCTACAATA
NCCCATTTTNTTTNNNCTGAGGGNATGCTGGGGXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTAGCCTGTAGGTGAAT
GACAGTTCCACCAAGCAAGTTCCTACCATGAGTGGTGGGAAGAAACTACA
TTCTCTCATTCTGCTGTGCACTCTCCATTGCTGTCCCACTGAGCTACTTC
ACAGTATTAATAGTTTAAAAGCTTTTAGCTCTTCAGGTGTCACTAGAGAA
TGAAAATGATAGGCAGAAGGTGAATTCAATTGGGTGGAGTCAGGGTGGTT
ACACAGAAAACATATTTTACCAATGTACTTGTACTACACACACACACACA
CACACACACACACACACACACACGCACACACACATACACACACACACACA
CCTCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTA
TCTATCTATCTATCTATCTATCTGTCTGTCTATCTATCTGTCTATCTATC
TATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTA
TCTATCTATCTATCATCTATCTACTTATCTATCTAGATCTAGATCTAGGT
ATTTGGTGACACTGCCCAATGACACATGGAAGTTGCTATGAAAATAATGA
TTGCAGATGCAGAATTTCTGGCTAGAAAACTATGAATTTAATCCCTATCC
CCTGTCCCTTTTTTTCTTTCATAGCGAGGTAGTTGTTTTCTATCTTACTC
CCACGGGAGAGAATGTTGATCAGCTATAATTCTTGTGTTTGGGTATAAAA
ATAACATCCGCTATTTAAAAGAGTATAGAGCAACTACTACTGTCGGTGAA
TTCTTTCTTCTTCTTCCCCTTTTTTTTTTTCACCTTTTCTCTTCCTCTTC
CTTCTCCTCCTTCCTTCTTCTCCTTCTTCTTCTTTTTCCTCCTCTTCCTT
CCTCCTCCCTTATCTTTTTTCCCTCTTCCTCCTTCCTCTTCCCTCTTTCT
TCCTTCATTTCCATCCCCCTTTTTTTTTTTTTTCTATTCTTCCTCCAAAT
CCAACTTGGTTTGGTTTCCTTTAAAATAAAAAATAAAGCCTTTCTCCCGG
GTTTTATTCTCTGGAAATCTCTTATTTAATTATATTGCCCTTGTGACATA
GGTTTTACACCCCCTCCATAACATGTGGTGTGTTAAAATAGGAAACCTCC
GTTATAAATAAAAAAATAATCTCCTCCTTATCTTTGGATTATAAAATTAC
CAAAGGGTCTCCCCTCTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no106_o14.g1 MSMg01no106_o14.g1 CHROMAT_FILE:
MSMg01no106_o14.g1 PHD_FILE: MSMg01no106_o14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:08:01 2005
         (526 letters)



>mm_chr1_45490799_45491724
          Length = 926

 Score =  476 bits (246), Expect = e-138
 Identities = 322/372 (86%), Gaps = 41/372 (11%)
 Strand = Plus / Minus

                                                                       
Query: 3   gtggtgggaagaaactacattctctcattctgctgtgcactctccattgctgtcccactg 62
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 406 gtggtgggaagaaactacattctctcattctgctgtgcattctccattgctgtcccactg 347

                                                                       
Query: 63  agctacttcacagtattaatagtttaaaagcttttagctcttcaggtgtcactagagaat 122
           | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 aactacttcacagaattaatagtttaaaagcttttagctcttcaggtgtcactagagaat 287

                                                                       
Query: 123 gaaaatgataggcagaaggtgaattcaattgggtggagtcagggtggttacacagaaaac 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 gaaaatgataggcagaaggtgaattcaattgggtggagtcagggtggttacacagaaaac 227

                                                                       
Query: 183 atattttaccaatgtacttgtactacacacacacacacacacacacacacacacacacac 242
           ||||||||||||||||||||||||||||||||||||                        
Sbjct: 226 atattttaccaatgtacttgtactacacacacacac------------------------ 191

                                                                       
Query: 243 acgcacacacacatacacacacacacacacctctatctatctatctatctatctatctat 302
                         |||||||||||||||||||||||||||| ||| ||||||| |||||
Sbjct: 190 --------------acacacacacacacacctctatctatctgtctgtctatctgtctat 145

                                                                       
Query: 303 ctatctatctatctatctatctatctatctatctatctatctgtctgtctatctatct-g 361
           |||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||  
Sbjct: 144 ctatctatctatctatctatctatctatctatctatctatctatctatc-atctatctac 86

                       
Query: 362 tctatctatcta 373
           | ||||||||||
Sbjct: 85  t-tatctatcta 75


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 107
Number of extensions: 42
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space:   472656
Effective search space used:   472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)