Query= MSMg01no106_p09.b1 MSMg01no106_p09.b1 CHROMAT_FILE:
MSMg01no106_p09.b1 PHD_FILE: MSMg01no106_p09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:08:07 2005
(692 letters)
>mm_chr1_25008461_25009551
Length = 1091
Score = 1274 bits (659), Expect = 0.0
Identities = 684/695 (98%), Gaps = 7/695 (1%)
Strand = Plus / Minus
Query: 1 gataggggagttcttgggagaggggactgccct---aggggttaacattagaaataaata 57
|||||||||||||||||| |||||||||| | ||||||||||||||||||||||||
Sbjct: 969 gataggggagttcttgggggaggggactg---tgaaaggggttaacattagaaataaata 913
Query: 58 aagaaaatatttaataaaaaatatctaagaaagaaaaaaaagactgatcatagacctaag 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912 aagaaaatatttaataaaaaatatctaagaaagaaaaaaaagactgatcatagacctaag 853
Query: 118 tagcacatgtgcacaagtgtcataggaaagggacctagtttgcccaaaggacagtttctc 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 tagcacatgtgcacaagtgtcataggaaagggacctagtttgcccaaaggacagtttctc 793
Query: 178 actcaccatgagttgatttgtctgacaattgctaaaatttaagggcggaagataatcagt 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 actcaccatgagttgatttgtctgacaattgctaaaatttaagggcggaagataatcagt 733
Query: 238 caatcagccaagcaagaagaggataaaaaaacagatcgggtgcttgcaaagcactaaaaa 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 caatcagccaagcaagaagaggataaaaaaacagatcgggtgcttgcaaagcactaaaaa 673
Query: 298 agtgaatttaatattctcctgccacatgcttaagatgagagatgagaattgaaagatata 357
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 672 agtgaatttaatattctcctgccacatgcaaaagatgagagatgagaattgaaagatata 613
Query: 358 ttaattgttacaccaggtgaccattgcacttcctgtatgcaattgaaaaaaaaaacaaca 417
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 612 ttaattgttacaccaggtgaccattgcacttcctgtatgcaattg-aaaaaaaaacaaca 554
Query: 418 aaaaaacagaaatttcaggtcagaagtgagacgtgcttcagcacggtgaaaatcataact 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 aaaaaacagaaatttcaggtcagaagtgagacgtgcttcagcacggtgaaaatcataact 494
Query: 478 gttcatcacaatcaatgacaagtaacatcagtgtgtgattaaggtggtggccatgaggtt 537
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 493 gttcatcacaatcaatgacaagtaacatcagtgtgtggttaaggtggtggccatgaggtt 434
Query: 538 ttacagttcctaaaaggtttgggtgtaatcatcttgaataaatgggaaaagggcattaaa 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ttacagttcctaaaaggtttgggtgtaatcatcttgaataaatgggaaaagggcattaaa 374
Query: 598 aaaaaagaagaaggaaattaaactttcttcaataaagcttgacaggaaattccaccaatt 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 aaaaaagaagaaggaaattaaactttcttcaataaagcttgacaggaaattccaccaatt 314
Query: 658 cagaagtagctgacacacacccttccagggtgagg 692
|||||||||||||||||||||||||||||||||||
Sbjct: 313 cagaagtagctgacacacacccttccagggtgagg 279
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1091
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1081
Effective search space: 737242
Effective search space used: 737242
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no106_p09.g1 MSMg01no106_p09.g1 CHROMAT_FILE:
MSMg01no106_p09.g1 PHD_FILE: MSMg01no106_p09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:08:07 2005
(548 letters)
>mm_chr1_24873161_24874099
Length = 939
Score = 868 bits (449), Expect = 0.0
Identities = 522/559 (93%), Gaps = 22/559 (3%)
Strand = Plus / Plus
Query: 1 gcatcatttgtgctgtttctcagtgggattgcaactgtcctggctgaagagcctatattt 60
|||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||
Sbjct: 201 gcatcatttgtgctgtttctcagtgggattgcaactgtcctggcagaggagtctatattt 260
Query: 61 tgaccttttgacacaagaccgttgaaaccgtggatcccatagaatcaaaaaacttcccag 120
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaacttttgacacaagactgttgaaaccgtggatcccatagaatcaaaaaacttcccag 320
Query: 121 gaatcacatgctaggaggaggaaaaggctgaggtctgcatcgaagccacgggagtaactt 180
|||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 gaatcagatgctgggaggaggaaaaggctgaggtctgcatcgcagccacgggagtaactt 380
Query: 181 gcataacagatcctgacagtgatggatgggacctctccttcaccaggaagatgtgttcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcataacagatcctgacagtgatggatgggacctctccttcaccaggaagatgtgttcct 440
Query: 241 tcctctgtataaacttaagcttaagttagtgcaacacagatgttctgggcatgggggtgg 300
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 441 tcctctgtataaacttaagcttaagttagtgcaacacagatggactgggcacaggggtgg 500
Query: 301 gcaatgaacctaaacatggtcacattgaatgactgtcctttctcttcttttcactctcat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcaatgaacctaaacatggtcacattgaatgactgtcctttctcttcttttcactctcat 560
Query: 361 ttgtctctttaattggcatattggggatgggtagctaaccttaccttgttaaggcccagt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgtctctttaattggcatattggggatgggtagctaaccttaccttgttaaggcccagt 620
Query: 421 atttgcccctaaatgtctgctcacatttttttttcatcattcatcctgccgctccggatt 480
|||||||||||| ||||||||||||||||||| ||||||||||||||| ||||
Sbjct: 621 atttgcccctaagtgtctgctcacattttttt--catcattcatcctgctgctc------ 672
Query: 481 gtgttttatggaaagaacttaataattcttcataaaaa-------------gaaaaacca 527
||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 673 -tgttttatggaaagaacttaataattcttcaaaaaaaaaaaaaaaaaaaagaaaaacca 731
Query: 528 ccctattttatatgtcata 546
|||||||||||||||||||
Sbjct: 732 ccctattttatatgtcata 750
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 939
Length adjustment: 10
Effective length of query: 538
Effective length of database: 929
Effective search space: 499802
Effective search space used: 499802
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
