Query= MSMg01no107_b04.b1 MSMg01no107_b04.b1 CHROMAT_FILE:
MSMg01no107_b04.b1 PHD_FILE: MSMg01no107_b04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:08:25 2005
(337 letters)
>mm_chr1_50790634_50791369
Length = 736
Score = 629 bits (325), Expect = 0.0
Identities = 334/337 (99%), Gaps = 1/337 (0%)
Strand = Plus / Plus
Query: 1 cttggtctcaaggagtttactgtgaaaactgcacatttttttatatcattacacacaatc 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 cttggtctcaaggagtttactgtgaaaactgcacatttttt-atatcattacacacaatc 259
Query: 61 aaatggcccagtaggtacttagtgatacaggactctatagatcattccagcagtaactac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aaatggcccagtaggtacttagtgatacaggactctatagatcattccagcagtaactac 319
Query: 121 caaaacatagctatttgtattatcatagttcaatcctaatgctattgcatatagcctttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 caaaacatagctatttgtattatcatagttcaatcctaatgctattgcatatagcctttc 379
Query: 181 acataatgccaatgcaacatgaggaaaaaaatatgcaatgagaggaataagaacttattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 acataatgccaatgcaacatgaggaaaaaaatatgcaatgagaggaataagaacttattt 439
Query: 241 tcaaatatacacacacatgcaaaaacacacacaaacacattttcacatacacatacagta 300
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 440 tcaaatatacacacacatgcaaaaacacacacaaacacatgctcacatacacatacagta 499
Query: 301 gtatatataaagttaaaaatatgtacaaccatacatt 337
|||||||||||||||||||||||||||||||||||||
Sbjct: 500 gtatatataaagttaaaaatatgtacaaccatacatt 536
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 736
Length adjustment: 9
Effective length of query: 328
Effective length of database: 727
Effective search space: 238456
Effective search space used: 238456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no107_b04.g1 MSMg01no107_b04.g1 CHROMAT_FILE:
MSMg01no107_b04.g1 PHD_FILE: MSMg01no107_b04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:08:25 2005
(273 letters)
>mm_chr1_50978307_50978979
Length = 673
Score = 497 bits (257), Expect = e-145
Identities = 269/273 (98%)
Strand = Plus / Minus
Query: 1 ttttctatacacaagcagaagtgattatggctgaatgatactgtacaaagcacattgatc 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 ttttctatatacaagcagaagtgattatggctgaatgatactgtacaaagcacattgatc 414
Query: 61 actagcaattaaagaggagtacaatattaacatcttgtaatttaatttccagtctacttc 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 413 actagcaattaaagaggagtacaatattaacatcttgtgatttaatttccagtctacttc 354
Query: 121 agataggaattatatttctataacaggagcatgaaaagcacatattaaaatttcatctta 180
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 353 agataggaattatatttctataacaggaacatgaaaagcacatattaaaatttcatctta 294
Query: 181 tgataaatctaatggagctgtgtttgtagatcaaattctaccggcatgtccaagaagctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 293 tgataaatctaatggagctgtgtttgtagatcaaattctaccggcatgtcccagaagctg 234
Query: 241 tcttcatttcttactgacttttaacacaaaaca 273
|||||||||||||||||||||||||||||||||
Sbjct: 233 tcttcatttcttactgacttttaacacaaaaca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 673
Length adjustment: 9
Effective length of query: 264
Effective length of database: 664
Effective search space: 175296
Effective search space used: 175296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
