BAC Information

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BAC

Clone NameMSMg01-108B15
Chromosome1 (Build37)
Map Location 140,293,044 - 140,293,562
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043143, Ptprc, LOC100042596, Atp6v1g3, LOC100042600
Downstream geneNek7, LOC545363, LOC667745, Lhx9, 2310009B15Rik, 1700019P21Rik, LOC100042623, Dennd1b, Crb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-108B15.T7 (MSMg01no108_b15.b1)MSMg01-108B15.TJ (MSMg01no108_b15.g1)
ACCAG321638AG321639
length717718
length of high quality
(start - end)
376 (59 - 434)539 (85 - 623)
definitionCHROMAT_FILE: MSMg01no108_b15.b1 PHD_FILE: MSMg01no108_b15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:10:50 2005CHROMAT_FILE: MSMg01no108_b15.g1 PHD_FILE: MSMg01no108_b15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:10:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATAGCACCTTCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCGCGGAATTCTTTGTTCACCTCTGAGCCCCATTTTTTAATGG
GGTTATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTG
GATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAGTC
TGTTGGTGGTCTTTTTGTCTAATTGACGGTGTCTTTTGCCTTGCAGAAAC
TTTTTAGTTTCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAA
GCCATTACTGTTCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAG
GCTTTTCCCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGT
GAAGTTCCTTGATCCACTTAGATTTGACCTTAGTACTAGGAGATAAGCAT
GGATCGATTCGTATTCTTCTACACGATAACAACCAGTTGTGCCAGCACCA
ATTGTTGAAAATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGT
CCAAGATCAATTGATCATAGGTGCGTGGGTTCATTTCCTGGTCTTTCATT
CTATTCCATTGGTCTACTTGTCTGTCCCTTTACCAGTACCTTGCCGTTTT
TATCCCAACTGCTCTGTATAAAACCTTTAGGTCTGTTATGACGATTCCGC
TCTAACTTCTTTTATCC
GCCCCNNCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGGCAAGCCTCTCC
TTTCAATATATTTACATCAAAATTCATGACAGTAGCAAAATTGCAGTTAT
GAAGTCACAAAAATAATTTGATGGTTGGGGGGGCATCACCACAACATTAG
GGAGTGTGTTAAAAGGGCTCACCATTAAGAAGGTTGAGAACCACTGCTCT
CTAGAGACCTCATGCCATGATAATGGGCTTGCACAAGAGTCAAGTGAGAG
AGTAGAAGAGGGTAAGCAAGAGTGAATGAATAAGACAGGAGCCAGATGTC
TTCATAACCAAGTGTGATGCTGGCATGGATCATTTTTGCAATGTTCTATT
AGTTAGATGTGAGGTACTAGGCCCAGCTCGATAGGAGATGACCAAAGGGA
TGAATGCCAGAAGGCAAGAGGAACTAATAGCACATTTAGTTCTGCAAGCT
GATGAGCTATGAGTTAAGAAAGTCACATGAAAGACGTTTTAGCTTCTGAG
GGATTTTGCAATGATTTCTAAGTTCATTTCTAAATTTTTATTTTGTTGCT
TTTTATAAATAATTTCAATCAACAGCTACATATAGAAATCACATATTTGT
TCTTGTGAGCATAGCCATTGTTGTGGTCCTTGTGGGCCTCAGTGCTATAT
AGTATTAAAGCTCACCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no108_b15.g1 MSMg01no108_b15.g1 CHROMAT_FILE:
MSMg01no108_b15.g1 PHD_FILE: MSMg01no108_b15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:10:50 2005
         (539 letters)



>mm_chr1_140292863_140293801
          Length = 939

 Score =  878 bits (454), Expect = 0.0
 Identities = 509/540 (94%), Gaps = 22/540 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttggcaagcctctcctttc-aatatatttacatcaaaattcatgacagtagcaaaattg 59
           |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct: 700 tttggcaagcctctcctttcaaatatatttacatcaaaattcatgatagtagcaaaattg 641

                                                                       
Query: 60  cagttatgaagtcacaaaaataatttgatggttgggggggcatcaccacaacattaggga 119
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 640 cagttatgaagtcacaaaaataatttgatggttgggggggcgtcaccacaacattaggga 581

                                                                       
Query: 120 gtgtgttaaaagggctcaccattaagaaggttgagaaccactgctctctagagacctcat 179
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 580 gtgtgttaaaagggctcaccattaagaaggttgagaaccactgctctatagagacctcat 521

                                                                       
Query: 180 gccatgataatgggcttgcacaagagtcaagtgagagagtagaagagggtaagcaagagt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 gccatgataatgggcttgcacaagagtcaagtgagagagtagaagagggtaagcaagagt 461

                                                                       
Query: 240 gaatgaataagacaggagccagatgtcttcataaccaagtgtgatgctggcatggatcat 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 gaatgaataagacaggagccagatgtcttcataaccaagtgtgatgctggcatggatcat 401

                                                                       
Query: 300 ttttgcaatgttctattagttagatgtgaggtactaggcccagctcgataggagatgacc 359
           ||||||||||||||| ||||||||||||||||||||||              ||||||||
Sbjct: 400 ttttgcaatgttctactagttagatgtgaggtactagg--------------agatgacc 355

                                                                       
Query: 360 aaagggatgaatgccagaaggcaagaggaactaatagcacatttagttctgcaagctgat 419
           ||||||||||||||||||||||||||||||||  ||||||||||||||| ||||||||||
Sbjct: 354 aaagggatgaatgccagaaggcaagaggaactgttagcacatttagttccgcaagctgat 295

                                                                       
Query: 420 gagctatgagttaagaaagtcacatgaaagacgttttagcttctgagggattttgcaatg 479
           |||       ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 294 gag-------ttaagaaagtcacatgaaagacgttttagcttctgagggtttttgcaatg 242

                                                                       
Query: 480 atttctaagttcatttctaaatttttattttgttgctttttataaataatttcaatcaac 539
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 241 atttctaagttcatttctaaatttttattctgttgctttttataaataatttcaatcaac 182


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space:   491441
Effective search space used:   491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)