Query= MSMg01no108_c18.b1 MSMg01no108_c18.b1 CHROMAT_FILE:
MSMg01no108_c18.b1 PHD_FILE: MSMg01no108_c18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:10:56 2005
(570 letters)
>mm_chr1_178524102_178525072
Length = 971
Score = 1019 bits (527), Expect = 0.0
Identities = 557/567 (98%), Gaps = 1/567 (0%)
Strand = Plus / Minus
Query: 5 gaattcacccttccttcgctaggtgcatgagcatctggtatagatgctcctttgcaacga 64
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 771 gaattcacccttccttagctaggtgcatgagcatctgacatagatgctcctttgcaacga 712
Query: 65 caggttgggtgagaagatgtctgaaccctcttctcacagatgctctgtgatcccatgagt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 caggttgggtgagaagatgtctgaaccctcttctcacagatgctctgtgatcccatgagt 652
Query: 125 cggttgtatctccatgcaggcctggacatgatagtagcaatgttcctggtgtgctttaag 184
|||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 651 cggttgtatctccatggaggcctggaaatgctagtagcaatgttcctggtgtgctttaag 592
Query: 185 gaaggatggcacagatggctgcaggcagtaatttgtcttgaacttgcagctgtctcccct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 gaaggatggcacagatggctgcaggcagtaatttgtcttgaacttgcagctgtctcccct 532
Query: 245 ggatcaggctcatgatgttcctaaatcatcacagcctcatttgagagccccatttaggct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 ggatcaggctcatgatgttcctaaatcatcacagcctcatttgagagccccatttaggct 472
Query: 305 gagagcattggactctcattcctagcagccttctgatttatatttcctggggcattgttt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 gagagcattggactctcattcctagcagccttctgatttatatttcctggggcattgttt 412
Query: 365 cattttctttaccaataatgtgaacaaaat-aaaaaagaacagatgccagaaactgggga 423
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 411 cattttccttaccaataatgtgaacaaaataaaaaaagaacagatgccagaaactgggga 352
Query: 424 attcattctgactgcgattctcccttagattagaaatggcctcaagaaattacatcagtg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 attcattctgactgcgattctcccttagattagaaatggcctcaagaaattacatcagtg 292
Query: 484 tataatcaggaccactctgagttctagagatgagcagaggaataaatcagaccttccaat 543
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 291 tataatcagtaccactctgagttctagagatgaacagaggaataaatcagaccttccaat 232
Query: 544 ggctgacagtctagttggccatggttt 570
|||||||||||||||||||||||||||
Sbjct: 231 ggctgacagtctagttggccatggttt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 971
Length adjustment: 10
Effective length of query: 560
Effective length of database: 961
Effective search space: 538160
Effective search space used: 538160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no108_c18.g1 MSMg01no108_c18.g1 CHROMAT_FILE:
MSMg01no108_c18.g1 PHD_FILE: MSMg01no108_c18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:10:56 2005
(244 letters)
>mm_chr1_178354383_178355030
Length = 648
Score = 391 bits (202), Expect = e-113
Identities = 234/248 (94%), Gaps = 8/248 (3%)
Strand = Plus / Plus
Query: 1 agcagaggctataattctgtacattcaaataattgcaatgccaattcc---aatataaaa 57
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct: 201 agcagaggctataattctgtacattcaaacaattgcaatgccaatt--tataatataaaa 258
Query: 58 tgtcatatcaatcataaacaagaacatggatggtgaatttggatgtattgttgcaacaag 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tgtcatatcaatcataaacaagaacatggatggtgaatttggatgtattgttgcaacaag 318
Query: 118 aaacccattgattaactgtttcaaacttaagaatgcattaaactagtcaataatgcctat 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 319 aaacccattgattaactgtttcaaacttaagaatgcattaaactagtcaataatgccaag 378
Query: 178 attaga---tcatagattctctctgcttgacaataaatattttcaaaaaatagttataat 234
| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aaaagaagatcatagattctccctgcttgacaataaatattttcaaaaaatagttataat 438
Query: 235 ataaaaac 242
||||||||
Sbjct: 439 ataaaaac 446
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 648
Length adjustment: 9
Effective length of query: 235
Effective length of database: 639
Effective search space: 150165
Effective search space used: 150165
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
