Query= MSMg01no108_g09.b1 MSMg01no108_g09.b1 CHROMAT_FILE:
MSMg01no108_g09.b1 PHD_FILE: MSMg01no108_g09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:15 2005
(651 letters)
>mm_chr1_3654792_3655842
Length = 1051
Score = 876 bits (453), Expect = 0.0
Identities = 468/473 (98%)
Strand = Plus / Minus
Query: 5 gaattcacttggatctctccatgagttggaataatttaccatcggtaggtatctctgtgt 64
|||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||
Sbjct: 473 gaattcacttggatttctctgtgagttggaataatttaccattggtaggtatctctgtgt 414
Query: 65 ggtattcttctgataactaaaggaaaagttcaaagctaacttatttgctacatgagaaag 124
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 ggtattcttctgatatctaaaggaaaagttcaaagctaacttatttgctacatgagaaag 354
Query: 125 aacatcttacatttattattcctccagagcatctcagtctagcttaacaaggtgattgaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 aacatcttacatttattattcctccagagcatctcagtctagcttaacaaggtgattgaa 294
Query: 185 tataggacctatgtgactgtgtatctattaatcatttaggtagtagtaattttgaagggt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 tataggacctatgtgactgtgtatctattaatcatttaggtagtagtaattttgaagggt 234
Query: 245 ttagatcagttacttaaaaaatctttattggagtttgggagatgactcactagttaagag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 ttagatcagttacttaaaaaatctttattggagtttgggagatgactcactagttaagag 174
Query: 305 tactggctgctcttgcagaggacctttgttgaattcccagcatccacttgacagctcaca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 tactggctgctcttgcagaggacctttgttgaattcccagcatccacttgacagctcaca 114
Query: 365 actgtctgtaactgcaatctcaggggatttgatgcccagtccaaacctctgctggcactc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 actgtctgtaactgcaatctcaggggatttgatgcccagtccaaacctctgctggcactc 54
Query: 425 cgcatgtagtgtccagacatgcatataagccaaaaactcatcaaatataataa 477
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53 cgcatgtagtgtccagacatgcatataagccaaaaactcatcaaatataataa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space: 667281
Effective search space used: 667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no108_g09.g1 MSMg01no108_g09.g1 CHROMAT_FILE:
MSMg01no108_g09.g1 PHD_FILE: MSMg01no108_g09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:15 2005
(615 letters)
>mm_chr1_3494166_3495178
Length = 1013
Score = 1131 bits (585), Expect = 0.0
Identities = 600/605 (99%), Gaps = 2/605 (0%)
Strand = Plus / Plus
Query: 1 ttaaattatgtttgccagacccctccataaatcatgcaaaataacaacaacaaatagaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaaattatgtttgccagacccctccataaatcatgcaaaataacaacaacaaatagaaa 260
Query: 61 agtcggtgaagctaaatgaggcagggcaaatcaatgagcattgacagaaacagagaccct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtcggtgaagctaaatgaggcagggcaaatcaatgagcattgacagaaacagagaccct 320
Query: 121 atataaacacaagatgatgttactgttgtacatattcttttatatacaataaaatattca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atataaacacaagatgatgttactgttgtacatattcttttatatacaataaaatattca 380
Query: 181 ccactgatgctggccatgaagggagaagctgtgtatggggtgattagatttcaagcttgg 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccgctgatgctggccatgaagggagaagctgtgtatggggtgattagatttcaagcttgg 440
Query: 241 ctggaatatctactaattttgaactatggtgtacctagaagcagtcatacccatgcaaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctggaatatctactaattttgaactatggtgtacctagaagcagtcatacccatgcaaag 500
Query: 301 atgttaatgtgcagattctaaactacataacaaagatgcttttctttgtgtcatattaat 360
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 501 atgttaatgtgcagattctaaactac-taacaaggatgcttttctttgtgtcatattaat 559
Query: 361 gatgtattttgaaagcatgtatagtattgcatgtttatagaaaggcaggattaaaatctt 420
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 560 gatgtattt-gaaagcatgtatagtattgcatgtttatagaaaggcaagattaaaatctt 618
Query: 421 attgtaaactgggctcaatagatgaataacaaaagttctagcatttctatgcccatttac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 attgtaaactgggctcaatagatgaataacaaaagttctagcatttctatgcccatttac 678
Query: 481 tggatctttgataaaagtggaagaagaagcgggtcatatgctgggaagaaaacaacagac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tggatctttgataaaagtggaagaagaagcgggtcatatgctgggaagaaaacaacagac 738
Query: 541 aggaactagtggaggttaaccaacaagatgcattttagctctgcagagccacagtctgta 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 aggaactagtggaggttaaccaacaagatgcattttagctctgcagagccacagtctgta 798
Query: 601 caaac 605
|||||
Sbjct: 799 caaac 803
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1013
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1003
Effective search space: 606815
Effective search space used: 606815
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
