Query= MSMg01no108_i22.b1 MSMg01no108_i22.b1 CHROMAT_FILE:
MSMg01no108_i22.b1 PHD_FILE: MSMg01no108_i22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:27 2005
(645 letters)
>mm_chr1_82905923_82906967
Length = 1045
Score = 692 bits (358), Expect = 0.0
Identities = 367/370 (99%)
Strand = Plus / Minus
Query: 275 aggcagcccatctggcatcttctttaattgcgctccaccttacatatcaatgtagagtct 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1045 aggcagcccatctggcatcttctttaattgcgctccaccttacatatcaatgtagagtct 986
Query: 335 ctcatttgaagccaaaccttgccaattcagctggtctagctaggcagtttgcttagggga 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 985 ctcatttgaagccaaaccttgccaattcagctggtctagctaggcagtttgcttagggga 926
Query: 395 tcctctatatcctcttaagtgctaggattgtaggtgcaccaccacacccactgcttttat 454
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 925 tcctctatatcctcttaagtgctaggattgtgggtgcaccaccacatccactgcttttat 866
Query: 455 gtgggtgagaagggtgcaaacattgatccatttttctatccttgaatagcttatttttaa 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 gtgggtgagaagggtgcaaacattgatccatttttctatccttgaatagcttatttttaa 806
Query: 515 agttttctacttaatttatagactatctttattgatgcatattgactttaaggctctttc 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 agttttctacttaatttatagactatctttattgatgcatattgactttaaggctctttc 746
Query: 575 ctctccaaaacttcttaccattaaatgttatgtgaaaataaaactaaggcaatgacacct 634
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 745 ctctccaaaacttcttaccattaaacgttatgtgaaaataaaactaaggcaatgacacct 686
Query: 635 tccatctggg 644
||||||||||
Sbjct: 685 tccatctggg 676
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space: 657225
Effective search space used: 657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no108_i22.g1 MSMg01no108_i22.g1 CHROMAT_FILE:
MSMg01no108_i22.g1 PHD_FILE: MSMg01no108_i22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:27 2005
(612 letters)
>mm_chr1_82817296_82818307
Length = 1012
Score = 1100 bits (569), Expect = 0.0
Identities = 602/615 (97%), Gaps = 6/615 (0%)
Strand = Plus / Plus
Query: 1 ttttgcaatgttaaaaaagatgtgcttgcagtttcctaaaaatcaaagggctgggctcca 60
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 ttttgcaaagttaaaagagatgtgcttgcagtttcctaaaaatcaaagggctgggctcca 257
Query: 61 gagattcagattcataagataatcaaggaaacctgcaataagtaactgaattgatatag- 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gagattcagattcataagataatcaaggaaacctgcaataagtaactgaattgatataga 317
Query: 120 --aaataaaaaaaaaactgggtctttggtttacatgagataaactagcagaaagcaatag 177
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 aaaaaaaaaaaaaaaactgggtctttggtttacatgagataaactagcagaaagcaatag 377
Query: 178 caattcttctttagaattttctctagcaagagctgagctgtctggagatctctggagagt 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 caattcttctttagaattttctctagcaagagctgagctgtctggagatctctggagagt 437
Query: 238 aaaaacagctcttcaaaaatttttttcttaacattatttctgacttggttggaaaaaaca 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 aaaaacagctcttcaaaaatttttttcttaacattatttctgacttggttggaaaaaaca 497
Query: 298 aactttttttggaggggggttaagcatatttttatttaaattttcaaaaatcaccatgaa 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 aactttttttggaggggggttaagcatatttttatttaaattttcaaaaatcaccatgaa 557
Query: 358 gtatatattattatgagataaaacatagcacattaatatcaaatattttagtatatagaa 417
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gtatatattattatgagacaaaacatagcacattaatatcaaatattttagtatatagaa 617
Query: 418 tagcaaactgagcattcaaggactttgtttacatagcaagtgcattgcaaacctcagata 477
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 618 tagcaaactgagcattcaaggactttgcttacatagcaagtacattgcaaacctcagata 677
Query: 478 tgattatgtcccatcatagtagacccatgatctgattctttttttttttaatttttacta 537
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 678 tgattatgtctcatcatagtagacccatgatctgattctttttttttt-aatttttacta 736
Query: 538 ggtattttcctcatttacatttccaatgctatccccaaagtccccatacccacccacccc 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 737 ggtattttcctcatttacatttccaatgctatccccaaagtccccatacccaccc--ccc 794
Query: 598 cacttccctacccac 612
|||||||||||||||
Sbjct: 795 cacttccctacccac 809
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space: 603204
Effective search space used: 603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
