Query= MSMg01no108_j22.b1 MSMg01no108_j22.b1 CHROMAT_FILE:
MSMg01no108_j22.b1 PHD_FILE: MSMg01no108_j22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:32 2005
(225 letters)
>mm_chr1_138623388_138624013
Length = 626
Score = 375 bits (194), Expect = e-108
Identities = 215/224 (95%), Gaps = 6/224 (2%)
Strand = Plus / Plus
Query: 2 ctctgtcagggtgtcagatcttggag---cctagacagttgtgagctgccatgtgggtgc 58
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 201 ctctgtcagggtgtcagatcttggagtta--tagacagttgtgagctgccatgtaggtgc 258
Query: 59 tgggaattaaaccctgggtctttagactcctaactgctgagccatctctccagctcctat 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tgggaattaaaccctgggtctttagactcctaactgctgagccatctctccagctcctat 318
Query: 119 gaattcataacaatgtgtacattagcattttttt-atctttatgttagtttaaatgtcaa 177
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 319 gaattcataacaatgtgtacattagcattttttttatctttaagttagtttaaatgtcaa 378
Query: 178 tattttaggcagaagattctgggtccccccttcctccagggttt 221
||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 379 tattttaggcagaagattctgggtccctccttcctccagggttt 422
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 225
Length of database: 626
Length adjustment: 9
Effective length of query: 216
Effective length of database: 617
Effective search space: 133272
Effective search space used: 133272
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no108_j22.g1 MSMg01no108_j22.g1 CHROMAT_FILE:
MSMg01no108_j22.g1 PHD_FILE: MSMg01no108_j22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:32 2005
(283 letters)
>mm_chr1_138774442_138775124
Length = 683
Score = 449 bits (232), Expect = e-130
Identities = 264/282 (93%), Gaps = 13/282 (4%)
Strand = Plus / Minus
Query: 1 tgtaagtgaaggctccattgaggttaaaattaatgcttttttcccccgccacatatacag 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 629 tgtaagtgaaggctccattgaagttaaaattaatgcttttttcccccgccacatatacag 570
Query: 61 gcttcaagcacatagctatgtacatcgtacctacttctgttccaagtaaatgaatgacta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 gcttcaagcacatagctatgtacatcgtacctacttctgttccaagtaaatgaatgacta 510
Query: 121 atgactctcaggcccggtagggaagactagttaaggaaactagttaaggacactctggca 180
|||||||||||||||| ||||||||| ||| ||||||||||||||||||
Sbjct: 509 atgactctcaggcccgttagggaaga----tta---------gttaaggacactctggca 463
Query: 181 gttcttccttggcgctaatggaatactacatccataagacacatggaggatatcccatcg 240
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 462 gttcttccttggcgctaatggaatactacatccataagacacatggagaataccccatcg 403
Query: 241 tatatccacaccctgtagctcctcacgtcatcccaaattata 282
|||| |||||||||||||||||||||||||||||||||||||
Sbjct: 402 tatagccacaccctgtagctcctcacgtcatcccaaattata 361
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space: 184676
Effective search space used: 184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
