BAC Information

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BAC

Clone NameMSMg01-108L24
Chromosome1 (Build37)
Map Location 78,745,061 - 78,745,694
singlet/doubletsinglet
Overlap genenone
Upstream genePax3, LOC100039210, Sgpp2, LOC100039382, Farsb, Mogat1, Acsl3, Utp14b
Downstream geneLOC620521, Kcne4, LOC100039260, EG545332, Scg2, Ap1s3, Wdfy1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-108L24.T7 (MSMg01no108_l24.b1)MSMg01-108L24.TJ (MSMg01no108_l24.g1)
ACCAG322114AG322115
length682717
length of high quality
(start - end)
637 (43 - 679)296 (78 - 373)
definitionCHROMAT_FILE: MSMg01no108_l24.b1 PHD_FILE: MSMg01no108_l24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:43 2005CHROMAT_FILE: MSMg01no108_l24.g1 PHD_FILE: MSMg01no108_l24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTAATCATAATTGCGGCGCTAAAGACTCCTATTCGAGAGGACCGCGGAAT
TCAAGGGATCCACCTGCTCCCGCCTCCAGAATTTTGGGATTAAAGTGTCT
GCCTTCATGTCTGGTAAAATTCCGGTTTTTAATGCTAAGTTCTTGGAGGT
GAAACTCAGGTCTTCATGACTATATAGCAAACACTTAATTGACTGTGCAA
TCTCCCAGCTCCTATATAAGTTCTTTTGCAAGGCATCCATTCAAACCTTG
TGGTCATTTTAAAAATCAGGTTATTTTGTTATAATTAATTACTCTACATT
TAAAAATTATTTATTTTGTGTGCACTGGTGTTTTGCCTGCATGTATGTCC
CTGTTTGGGTGTCAGATTCCCTGGAACTGGAGTCACTAATAGTTGTGAGC
TGCCATGTGGGTCCTGGGAATTGAACCTGGGTATTCTGGAAGAATGGCTA
GTGCTCTTAACCACTGAGGCATCTGGAAGGAAATACAATTTATAACATTC
ATATATAGGTTAGTGACCTTGTGTTTTGTTCAAGAAAGTTTGTCTATCCT
CAAGTTTCAAAATTTTTCTCCAGGGATAGTGGTGTGTCTCAATGGTAGAA
TAGTTTCTTCTCAGGTGTGTTAAGCTCTGTAGTAGATACCCATTGCACAT
AATTTTTCTCACATTTACATATTTACTGTTGT
TACCCACATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTGTAATTTTATTTCTGTTGT
GAAAAACATACTGACAAAAAAAAAAAAAAATGTAGGTGAGGATGGGTTCA
TTTGCTTACAAATCCAGGTATGGCCTGTGATTACAGGGATATCACAGGAG
CTGGCCAGACCACATCCACAGTCAAGAGCAGAGAAAGGTGACTGTACCAA
TGCTGCCTGCTTGCTTGCTTCACTTTGAGGTCTGCAGGGCCCTGGCTTTC
CCTGTATCAGTTAACAATCAAGACAATCGCTCCCAGAATACTGAAAGAAG
CTGAGAAGGGTGATCCTGTAGGAGGACCAGCAGTCTCAATTAATCTGGAC
CCCTGAGATCTCTCAAACACTGGACCACCAAATAGACAGCATATACCAGT
TTATATGAGGCCCCCAATACACAGTAGAGGACTGTCGGGTCTGCGTTCAT
TCAGACCTGATGCACTTAACGCTCACTATATTGGACACCTCCGTGAGTTT
ACAGATCCGGCGGTGTGTATCGTGTGGACATCCTTAGCGGGTTTGCTTAG
CACGTATGTTACCGTCCTACCTGTCTTTCCGTCGTTCCCTTCTTCTTTCC
CTTTTCCTCCTATACCTCCTTTCTTCCTCCAGTTTCTCCCCTTCCCGCCT
TCCTCCCTTCTTCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no108_l24.b1 MSMg01no108_l24.b1 CHROMAT_FILE:
MSMg01no108_l24.b1 PHD_FILE: MSMg01no108_l24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:43 2005
         (637 letters)



>mm_chr1_78744858_78745894
          Length = 1037

 Score = 1156 bits (598), Expect = 0.0
 Identities = 625/634 (98%), Gaps = 1/634 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattca-agggatccacctgctcccgcctccagaattttgggattaaagtgtctgcctt 63
           ||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 204 gaattcacagggatccacctgctcctgcctccagaattttgggattaaggtgtctgcctt 263

                                                                       
Query: 64  catgtctggtaaaattccggtttttaatgctaagttcttggaggtgaaactcaggtcttc 123
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 catgcctggtaaaattccggtttttaatgctaagttcttggaggtgaaactcaggtcttc 323

                                                                       
Query: 124 atgactatatagcaaacacttaattgactgtgcaatctcccagctcctatataagttctt 183
           |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 324 atgactgtatagcaaacacttaattgactgtgctatctcccagctcctatataagttctt 383

                                                                       
Query: 184 ttgcaaggcatccattcaaaccttgtggtcattttaaaaatcaggttattttgttataat 243
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 384 ttgcaaggcatccattcaaaccttgtgctcattttaaaaatcaggttattttgttataat 443

                                                                       
Query: 244 taattactctacatttaaaaattatttattttgtgtgcactggtgttttgcctgcatgta 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 taattactctacatttaaaaattatttattttgtgtgcactggtgttttgcctgcatgta 503

                                                                       
Query: 304 tgtccctgtttgggtgtcagattccctggaactggagtcactaatagttgtgagctgcca 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgtccctgtttgggtgtcagattccctggaactggagtcactaatagttgtgagctgcca 563

                                                                       
Query: 364 tgtgggtcctgggaattgaacctgggtattctggaagaatggctagtgctcttaaccact 423
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgtgggtgctgggaattgaacctgggtattctggaagaatggctagtgctcttaaccact 623

                                                                       
Query: 424 gaggcatctggaaggaaatacaatttataacattcatatataggttagtgaccttgtgtt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gaggcatctggaaggaaatacaatttataacattcatatataggttagtgaccttgtgtt 683

                                                                       
Query: 484 ttgttcaagaaagtttgtctatcctcaagtttcaaaatttttctccagggatagtggtgt 543
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 684 ttgttcaagaaagtttgtctatcctcaattttcaaaatttttctccagggatagtggtgt 743

                                                                       
Query: 544 gtctcaatggtagaatagtttcttctcaggtgtgttaagctctgtagtagatacccattg 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gtctcaatggtagaatagtttcttctcaggtgtgttaagctctgtagtagatacccattg 803

                                             
Query: 604 cacataatttttctcacatttacatatttactgt 637
           ||||||||||||||||||||||||||||||||||
Sbjct: 804 cacataatttttctcacatttacatatttactgt 837


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space:   643929
Effective search space used:   643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)