Query= MSMg01no108_m24.b1 MSMg01no108_m24.b1 CHROMAT_FILE:
MSMg01no108_m24.b1 PHD_FILE: MSMg01no108_m24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:47 2005
(662 letters)
>mm_chr1_187366514_187367575
Length = 1062
Score = 1222 bits (632), Expect = 0.0
Identities = 653/660 (98%), Gaps = 2/660 (0%)
Strand = Plus / Plus
Query: 5 gaattcctcattttctacatgctagattttaggtctttcccaagcctactttactatctt 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattcctcattttctagatgctagattttaggtctttcccaagcctactttactatctt 262
Query: 65 gttttcatgaaccttctggaaaa-attgcaaatggaatgcttttcaagaccatgaaatct 123
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 263 gttttcatgaaccttctggaaaacattgcaaatggaatgcttttcaagaccatgaaatct 322
Query: 124 aaaaaaaaa-ttttttttgtttacttgtagatcatttgcaaaataggtacactacttcct 182
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aaaaaaaaatttttttttgtttacttgtagatcatttgcaaaataggtacactacttcct 382
Query: 183 ttttatttatgtggttcctaactatattgactgactttggccaataggaatacattaaat 242
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 383 ttttatttacgtggttcctaactatattgactgactttggccaataggaatagattaaat 442
Query: 243 ataaaacagtaaatataaaatataaaaaaatacataaatataaaacagtagttggaaaat 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ataaaacagtaaatataaaatataaaaaaatacataaatataaaacagtagttggaaaat 502
Query: 303 gcttacccattggggtagaccatttcatgctgctttttggactctccaccccccaaaacc 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gcttacccattggggtagaccatttcatgctgctttttggactctccaccccccaaaacc 562
Query: 363 acaagagaaagtttagtttgttggtaaatgagagaccatgtgacgcccatgcagagaaat 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 acaagagaaagtttagtttgttggtaaatgagagaccatgtgacgcccatgcagagaaat 622
Query: 423 ggtgacaactcagggctactccctttctgctttagactaactacccttttggagtgagag 482
||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ggtgataactcagggccactccctttctgctttagactaactacccttttggagtgagag 682
Query: 483 tgaagtcatcccacgctgctgagcccaagctttacttgactgttaagatttgccaaacca 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tgaagtcatcccacgctgctgagcccaagctttacttgactgttaagatttgccaaacca 742
Query: 543 gataagattagcagagccactcagctgatctgtagaatgtagagaaagtatattctaaac 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 gataagattagcagagccactcagctgatctgtagaatgtagagaaagtatattctaaac 802
Query: 603 ccaccaaactttatggtgacttattttctagtaaacaccacataagactctgtcctgtca 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 ccaccaaactttatggtgacttattttctagtaaacaccacataagactctgtcctgtca 862
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space: 685904
Effective search space used: 685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no108_m24.g1 MSMg01no108_m24.g1 CHROMAT_FILE:
MSMg01no108_m24.g1 PHD_FILE: MSMg01no108_m24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:47 2005
(390 letters)
>mm_chr1_187563389_187564179
Length = 791
Score = 584 bits (302), Expect = e-171
Identities = 323/330 (97%), Gaps = 1/330 (0%)
Strand = Plus / Minus
Query: 1 tttctgattacagtttcctctcctactatttcaagatgtaagaatctgaggagcagttag 60
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 330 tttctgattacagtttcctctcctactatttcaagatgtaagaatcagaggagcagctag 271
Query: 61 ataaacccacctggaaaacacatctctaaaggtatgagtggcctattttggggt-ggggg 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 270 ataaacccacctggaaaacacatctctaaaggtatgagtggcctattttggggtgggggg 211
Query: 120 ggggatgcatgattttaattaatctattataacaatataaaaactcaaatacatttaaaa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 ggggatgcatgattttaattaatctattataacaatataaaaactcaaatacatttaaaa 151
Query: 180 taaataaaaaatgggtttctgtaaagaaaaaagaaaatatttgaagaaattgaaaggaaa 239
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 taaatgaaaagtgggtttctgtaaagaaaaaagaaaatatttgaagaaattgaaaggaaa 91
Query: 240 tataaaaatgaaaacaggaacttaaaatgtaaaaaataattcagtatggttagtagttaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 90 tataaaaatgaaaacaggaacttaaaatgtaaaaaataattcagtatggttagtagtcaa 31
Query: 300 ataaaatgattagataaaatacatgtatac 329
||||||||||||||||||||||||| ||||
Sbjct: 30 ataaaatgattagataaaatacatgaatac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 791
Length adjustment: 9
Effective length of query: 381
Effective length of database: 782
Effective search space: 297942
Effective search space used: 297942
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
