BAC Information

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BAC

Clone NameMSMg01-108N03
Chromosome1 (Build37)
Map Location 18,453,540 - 18,562,502
singlet/doubletdoublet
Overlap genenone
Upstream genePi15, Crispld1, LOC665564, LOC100040126, Crisp4, EG574082, EG654460, Defb17
Downstream geneLOC383499, EG435611, LOC100040189, Tcfap2d, LOC100040413, Tcfap2b, LOC100040198, LOC226901
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-108N03.T7 (MSMg01no108_n03.b1)MSMg01-108N03.TJ (MSMg01no108_n03.g1)
ACCAG322168AG322169
length727727
length of high quality
(start - end)
339 (54 - 392)224 (81 - 304)
definitionCHROMAT_FILE: MSMg01no108_n03.b1 PHD_FILE: MSMg01no108_n03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:48 2005CHROMAT_FILE: MSMg01no108_n03.g1 PHD_FILE: MSMg01no108_n03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,562,169 - 18,562,502)(18,453,540 - 18,453,763)
sequence
CTTCAATTGTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XGCCGCGGAATTCTTGATTTTTCTTCCAGCTCTAACATTTAGAGAAGAAT
GAAGAATCTATGGGACTCAAATCCACCAGGATTGAAGCAACTCATAGAGT
AAGAGGAAAATAACAATTGAGTCTCAGTCTTGGACATATACAGGTTGCAA
TGCCATCCAATATAGAAAGATAGAGCAGTGAATCTAGAAAGTTCATTCAC
AATGTGGGAGGGCAGCCTCTTGGAGATGCAAGATGGCCTTTAGATAGCAT
TGATAGTGGATCTTAGGAACTGACTCCATTGTTGAAGTGATTGCTGCTCA
GTCAGGAGGTCCCAAGTTATATCTGTTCCACCCACATAATACCAGAGCAC
AGAGAAAGTATTATTCGCCCAGTTATTGGGAAAGAGGCAAAACTACAAAA
GGGAGCTCCAAGCTCAGTGAGAGACATCTCTTCTTAATTAAAATAGTGAA
GAAAGGAATACATCCAAAATATACTGCTGACCATCCTTTATCACTTGCAT
ACGACGATGATGATAATGAATATGATACCTTTAACCTAGCTGATTACTAC
GCTCCACGACCTTATATATCTTGTGCCTAACATACCTCCTGTCTTTTTTC
TATAATCCCCTTCTACTCTTCTTTTTTTTTCTCTGCGTTTTAATTATACT
AATATGTTTATAAGCCATTTTTATATC
GTTTTTTTCGATATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTTATGGGCTTTGTGATT
ACAGGCCCTGTTCCCTGGAGTCTTGGGGCAGCTGTCAGAAGCAGAGCTCC
GTCCAGGCCTCTGACTTGCATTTAGATTTCTGAGATGAGATCTCTCAGAG
CACTAGGGCTGGATTCTGTGCACATTTTTCTTATAGGTTTTACAGCAGTG
TCTACCCAAAATGCAAAGGGAGACAAAATTGAATTCAGTAAGCAAAATGT
ACTAGAGCCTAGAGTATGCAGTTAGCTGTGACCAGTGCAGTCAGCTAAAC
TATGTATCTGTACATGTGGAGATAAACCATTTTCTTTCAAATATGAGTGC
ACACACCTAAACAGTTTTAAAAATACACAATTCATCTTGACCATGTGTAA
AGCATGCCTGACACGCCAGAAATGTCCTTATTACTTCCAGAGTTAATGTC
TTACTTCCCTTTTAATGCAGTGCTTTTGTATGTTCTCCTACCATGTAATA
AACTCCTTATCCTTTGTCCCCGCTATTACATTCACATTTACCCCACTGAA
TATTCATAGTTTTCCTCTTATCTCCCTGTTAACGTCTGTGTCTATTCCAT
TTTCTTCACATCCCCAGCTAACTTGTACTCCTATATATGTTTTACCTTTA
TCCGCCGCGTTTTTGTATTTCAAACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no108_n03.b1 MSMg01no108_n03.b1 CHROMAT_FILE:
MSMg01no108_n03.b1 PHD_FILE: MSMg01no108_n03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:48 2005
         (339 letters)



>mm_chr1_18561965_18562703
          Length = 739

 Score =  600 bits (310), Expect = e-176
 Identities = 328/334 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttgatttttcttccagctctaacatttagagaagaatgaagaatctatgggact 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gaattcttgattttttttccagctctaacatttagagaagaatgaagaatctatgggact 479

                                                                       
Query: 65  caaatccaccaggattgaagcaactcatagagtaagaggaaaataacaattgagtctcag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 caaatccaccaggattgaagcaactcatagagtaagaggaaaataacaattgagtctcag 419

                                                                       
Query: 125 tcttggacatatacaggttgcaatgccatccaatatagaaagatagagcagtgaatctag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tcttggacatatacaggttgcaatgccatccaatatagaaagatagagcagtgaatctag 359

                                                                       
Query: 185 aaagttcattcacaatgtgggagggcagcctcttggagatgcaagatggcctttagatag 244
           ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 aaagttcatccacaaggtgggagggcagcctcttggagatgcaagatggcctttagatag 299

                                                                       
Query: 245 cattgatagtggatcttaggaactgactccattgttgaagtgattgctgctcagtcagga 304
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 298 tattgatagtggatcttaggaactgactccattgttgaagtgattgctgctcagttggga 239

                                             
Query: 305 ggtcccaagttatatctgttccacccacataata 338
           ||||||||||||||||||||||||||||||||||
Sbjct: 238 ggtcccaagttatatctgttccacccacataata 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no108_n03.g1 MSMg01no108_n03.g1 CHROMAT_FILE:
MSMg01no108_n03.g1 PHD_FILE: MSMg01no108_n03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:48 2005
         (224 letters)



>mm_chr1_18453340_18453963
          Length = 624

 Score =  433 bits (224), Expect = e-126
 Identities = 224/224 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctttatgggctttgtgattacaggccctgttccctggagtcttggggcagctgtcagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctttatgggctttgtgattacaggccctgttccctggagtcttggggcagctgtcagaa 260

                                                                       
Query: 61  gcagagctccgtccaggcctctgacttgcatttagatttctgagatgagatctctcagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcagagctccgtccaggcctctgacttgcatttagatttctgagatgagatctctcagag 320

                                                                       
Query: 121 cactagggctggattctgtgcacatttttcttataggttttacagcagtgtctacccaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cactagggctggattctgtgcacatttttcttataggttttacagcagtgtctacccaaa 380

                                                       
Query: 181 atgcaaagggagacaaaattgaattcagtaagcaaaatgtacta 224
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgcaaagggagacaaaattgaattcagtaagcaaaatgtacta 424


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 224
Length of database: 624
Length adjustment: 9
Effective length of query: 215
Effective length of database: 615
Effective search space:   132225
Effective search space used:   132225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)