BAC Information

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BAC

Clone NameMSMg01-109L02
Chromosome1 (Build37)
Map Location 184,019,767 - 184,020,079
singlet/doubletsinglet
Overlap genenone
Upstream geneFgfr3-ps, Nvl, Cnih4, Wdr26, LOC100042363, LOC666519, Cnih3, Ccdc121, A230079K17Rik, Lbr, EG433384, Enah
Downstream geneSrp9, EG625823, Degs1, 1700047M11Rik, Fbxo28, LOC435657, ENSMUSG00000073482, Trp53bp2, Capn2, LOC666624, Capn8, 4922505E12Rik, Susd4, Tlr5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109L02.T7 (MSMg01no109_l02.b1)MSMg01-109L02.TJ (MSMg01no109_l02.g1)
ACCAG322814AG322815
length854714
length of high quality
(start - end)
---313 (87 - 399)
definitionCHROMAT_FILE: MSMg01no109_l02.b1 PHD_FILE: MSMg01no109_l02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:00 2005CHROMAT_FILE: MSMg01no109_l02.g1 PHD_FILE: MSMg01no109_l02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAAAGAGNNGAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTT
TCAGAGGATCCGTCGGAATTCTACATACATTTTTCCTTATAAACTTATCT
GTGCTAGAGTCTCAAAAATATGTGCCACTAATCTGTTACACCCTCAAATT
ATCGTAGCAAAACAGAACTGCAATTTTCTCGCATATTCAATATGTTCTCT
AAAGACAATCGCTTCTTACTATCTATAAACACGATGTACTTGTACTGTGA
CGTGCACTCATATTTGTCCCCCGCACTATATGACAAAGAGGTTACCACGC
AGTTTTTTGCCGCTTCTATCTCCCGTTGCATTGATATCGTCACTCCCTCC
GCGCATTTCCACGCCCCCGTTGTTCCCTTCCGTACCTTTTTATTCTATTT
CTATACCCTCCTTTAGTCCGTATACGCTATTTTTTTTTCCTTACCTCACA
CACTTCTAATCCCCAAATACCCTCATCATACACCTGTCTTATTTTATTTT
TCCCAAGACAACCTTCTAACTTCGTTCTTCCTTTTCCAGTCCTTACCCCA
TTTTACCTCCTTCTTGATCTCCATTATTCCCCATCCTATTCCATAATTCT
TTATTTATTTATATACCCATACTTCTCCCCATTACCCTCCTTATTCATTT
CCCCATTCCCTCAATTTCTTCCCTTATCCTCCCCCCTCCCCCCATATACC
CTTTTACTCCCCCTTATCCCCCCTTCTCTTTACCCATCCACCACCCCGCC
CCTTTTCCCTTATCCCACCATTCCCTCTATCCCTCTTTCTCATTACCATA
TTTCCACAACCCCCCTCTTTCCCCCTATTTCGCCCCCCTCCTTTCCTATA
CCCC
CAACAACATANNNTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATTACCTAAAGCA
TTTATGTGGCCTATGTCTGCTCTATTTAAAGAGGCACTCGGCAATCGTTT
TCATTACTGTCTCTTCTGAAAACAGTCACATCTCGGTTTTACAAAGGCAG
AAGGAGCTGGCTCAAGAACACGTGGCCAAATAGCAAAAGTTAGAAATCAC
AGCCCTTAAGTTCCATGGAGATCGTCTCACCAGCCTGCTCTGCCCGAGGG
CCTGCAAGGGCCTCTCCTGCTTACAGATAAGTCACCGAACAGTGACCAGG
GAAGTGCGGACCCTTATGCTAGGCGACATGACCTTGTTTCCTCCAGCTTA
AGACCACGGGTGGACTGAAACTGTTCAACCGAATCTTGAAAGATCCTGGT
GCCAGCCGGTCCTCAAGGAGGCTGTTTAGACTTTTTCCAGGATATGTGGC
ACAATGCAGAGCTCTGGACAGGGGACTTGGGGTGTGTAGGGAAGAGCGAA
CTGGCCTTGTGTATCCTCCGTGTTCGGACTGTGGTAGAGCATAGGACCCC
ATGGATTTGAGGAAGGAGGAGGAGGTTGGGACTGAAATTGGAAACAAAGT
CTTGTTCTAGGCCGTTTTTGTGCCAGATCTACGTGTGATACTGTTGCTCC
GGATCTTTTTGCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_l02.g1 MSMg01no109_l02.g1 CHROMAT_FILE:
MSMg01no109_l02.g1 PHD_FILE: MSMg01no109_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:00 2005
         (313 letters)



>mm_chr1_184019567_184020279
          Length = 713

 Score =  567 bits (293), Expect = e-166
 Identities = 308/313 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattacctaaagcatttatgtggcctatgtctgctctatttaaagaggcactcggcaatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 cattacctaaagcatttatgtggcctatgtctgctctatttaaagaggcactcggcaatc 454

                                                                       
Query: 61  gttttcattactgtctcttctgaaaacagtcacatctcggttttacaaaggcagaaggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 gttttcattactgtctcttctgaaaacagtcacatctcggttttacaaaggcagaaggag 394

                                                                       
Query: 121 ctggctcaagaacacgtggccaaatagcaaaagttagaaatcacagcccttaagttccat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ctggctcaagaacacgtggccaaatagcaaaagttagaaatcacagcccttaagttccat 334

                                                                       
Query: 181 ggagatcgtctcaccagcctgctctgcccgagggcctgcaagggcctctcctgcttacag 240
           | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 333 gcagatcgtctcaccagcctgctctccccgagggcctgcaagggcctctcctgcttacag 274

                                                                       
Query: 241 ataagtcaccgaacagtgaccagggaagtgcggacccttatgctaggcgacatgaccttg 300
           ||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 273 ataagtcaccgaacagtcaccagggaagtgcagacccttatgctaggcaacatgaccttg 214

                        
Query: 301 tttcctccagctt 313
           |||||||||||||
Sbjct: 213 tttcctccagctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)