BAC Information

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BAC

Clone NameMSMg01-109O12
Chromosome1 (Build37)
Map Location 48,043,853 - 48,044,269
singlet/doubletsinglet
Overlap genenone
Upstream geneEG227061, LOC666869
Downstream geneLOC546734, LOC674566, LOC100041936, LOC666903, LOC666909
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-109O12.T7 (MSMg01no109_o12.b1)MSMg01-109O12.TJ (MSMg01no109_o12.g1)
ACCAG322971AG322972
length737728
length of high quality
(start - end)
393 (87 - 479)417 (75 - 491)
definitionCHROMAT_FILE: MSMg01no109_o12.b1 PHD_FILE: MSMg01no109_o12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:17 2005CHROMAT_FILE: MSMg01no109_o12.g1 PHD_FILE: MSMg01no109_o12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCCCTTCTTNNCCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCCAAAGAGGATCCGCGGAATTCTCCACTTCCCCATCTGATCCTGGACCC
TTTTTTGGTTGGGAGACTGTTAATGACTAGCATTTATTTCTTTAGGGGGT
TTGAGACTGTTTGGATGTTTTTTTCTGATCCTGTTTTAACTTTGGCACCT
GGTATGTGTCTAGAAAATTGTCTATTTCATTCATATTTTCCAATTTTGTT
AAATATAAGCTTTTGTATTAGAATCTGATGATTTCTTTTGAATTTCCATG
GTTTCCATTGTTATGTCTCTCTCCCTTTTCATTGCTGATTTTATTAATTT
GGATAATATCTCTATGGCCTCTGGTTAATCTGGCTAAGGGTTTATCTATC
TTCTTGGTTTTCTTAAAGTACCAGCTCCTGCTTTTGTTGATTCTCTACAT
ACTTCTTTTTGTTTCTATTTCTTTGATTTCAGACCTGAGTTTGATTATTT
CCTGTCGTCTACTCCTTTTGCGTTTATTTACATATTTTTCCTTTTTTTAT
TCTCTTTCCTTTGTCTTTCCTTTCCTTCCTTCCTTCTTTCTTTCTTCCTT
TCTATCCTACTTTACTTCTTTCATTCCTATCTTTCATTCTACCCTCCTTC
CTTCCCTTCCATCCCTCCCTCCTTCCTTTCCTTCCTATCTTTCACTCAAT
ACTCTTCTTCCTTCCCTTCCCTCCTTTCCTCCTTTTC
CCCAATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCCTAGAATTAGAGCCATCTTGGTGA
CTGACAACTTGAGCATCTACAAAAGCTGAATCAACAGAACCACTGGTACT
CCTTGGCACTTAAAAAAATAGCACACACACACACAAAAATATTTGCTGAT
AGAGTCTCTCAGAGGAATGGTTTTGATAAAATAGATCATCTAAAAATCAA
ATGAGAAATGATACAATCACAGAGAACCTGAATAAGGTTATGCATACATC
CCCGTGGAGCAAAGAGACTGATCCCATAGAGAGCTCACTGATGAGATACA
CTGGAGCTTTTATAGTGGATCTATAGACTTCACTGAAAGACTCAAGAGGG
TCACTATATACTCAACAACAGACATTAATATATATTCAAAATTGATTCAT
GTTGATTTCTTTTTAAATTATTTGAAGTTAAGATACTTTGGCCTTTGGAT
GTAGGAACATGAAGTTCTAACCACTGTTAGGCTATGTCAAGGCAATTGTA
AGGTTAAAGGTACAGATATATTGTGAGACAAAGTACGAAGCTGAGGTTGT
GCCAATACCAAATTTAATATTTACATATTTATTTATATACTTTTAAATCC
AACTTTATTTATACTATATTATATTTGGATACAATTAAGGATCCATATAC
CTACCCATTGTTTGAATGACATCTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no109_o12.g1 MSMg01no109_o12.g1 CHROMAT_FILE:
MSMg01no109_o12.g1 PHD_FILE: MSMg01no109_o12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:17 2005
         (417 letters)



>mm_chr1_48043653_48044469
          Length = 817

 Score =  775 bits (401), Expect = 0.0
 Identities = 413/417 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctagaattagagccatcttggtgactgacaacttgagcatctacaaaagctgaatcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctagaattagagccatcttggtgactgacaacttgagcatctacaaaagctgaatcaa 260

                                                                       
Query: 61  cagaaccactggtactccttggcacttaaaaaaatagcacacacacacacaaaaatattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 cagaaccactggtactccttggcacttaaaaaaatagcacacacacacacacaaatattt 320

                                                                       
Query: 121 gctgatagagtctctcagaggaatggttttgataaaatagatcatctaaaaatcaaatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctgatagagtctctcagaggaatggttttgataaaatagatcatctaaaaatcaaatga 380

                                                                       
Query: 181 gaaatgatacaatcacagagaacctgaataaggttatgcatacatccccgtggagcaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaatgatacaatcacagagaacctgaataaggttatgcatacatccccgtggagcaaag 440

                                                                       
Query: 241 agactgatcccatagagagctcactgatgagatacactggagcttttatagtggatctat 300
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 441 agactgatcccatagagagctcactgacgagatacactggagcttttatagtggatctat 500

                                                                       
Query: 301 agacttcactgaaagactcaagagggtcactatatactcaacaacagacattaatatata 360
           ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct: 501 agacttcactgaaagactcaagagggtcactatatacacaacaacagacattaaaatata 560

                                                                    
Query: 361 ttcaaaattgattcatgttgatttctttttaaattatttgaagttaagatactttgg 417
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttcaaaattgattcatgttgatttctttttaaattatttgaagttaagatactttgg 617


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space:   329664
Effective search space used:   329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)