ATCCCGGAAGATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCACTGGCCTGCCTAACCTGCTTGGCTAGCTCAAGAC
CACCGAAAGACCCTGTTGCAAAGAATAAGGTGGAAAGCTCCTAAGGAATG
ACACTTGAGCCTAATCTGGCCTACACACACACACACACACACACACACAC
ACACACACACACACACACACACATACACACGCACACCATTCATACACATG
CACAAATATGAATACCCACACATACATACATATAAAGATACACAGTGGAA
GCTCTATACATCACACACACACATGATTGTGACACTAATTAGAAAATACG
CCAACAGTTTGTACCTGACCATGTACTGACATAAGGCTTGAGGGATTTCA
GCTGGTGATGTAACATTGTTCATCGCCCCCCTTTGGTTTACATTATCAGC
CTCAGTCTTTTTAACCCTTTGATGTGATTCTTTCCCAAGGTCCTAGGGAA
GGAAACCACTCTGTGTTCTTGTTTCTATTTTTACAATGACACATTTATTT
CATGTTTAGCAATTACCCTCTAAATTGTTACACTTCTATTGAGTGCAGTC
TGAGTTCGCAATAATATCTGTCCCCCGCCAGGTACGCTGCTTCGAGCTTG
TCTGTTTGGCCTGCCTTAACCGACCTCTTCTCTCATCACCTTACTCACTT
CTTTTACCATCCCTTCCACCCTTCTTTTTCTTCCCCTCC

NCCAGCCCTTTTCACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAACGTGAGCA
CAGCGAGTAGGAATAAAGCCCGAGAAACCTGAAGTGACGTGGCGACAGAG
GAGGAGGCGACGACGAGGAGGAGGAGGCGACAGAGGAGGCTTCAGGACTG
ACCTCTGCATCTCTTTATATTAATTTCACCAATGGACCCTACCGGAGGGA
CAGATGCAGAGGGGGAAGAAAGAAGCTGACTAGCAAAGTGTTTAGATCAT
CTAACAAGCATCCCAGCACTTGGGAGACTGAGGCAGGAGGATTGCTGGCC
ATTCTGTATGTATCTGGGGCATCCTGGGCTACAGAATAAGACCCTGTTTC
AAAGCAACAGAGACCAAATGAACAGAAATCCAGGGGGAATGCACTGTGTG
TGGAGCTCCAATGAGCGCCGTTTTTAAAAAGCAGAATCTGACTCCAGTAG
TCACCTGAAAGATCCAGAACAGAAAACAAGGAACCTACACAATAGAAGCC
CAAGTGCTCAGGGGTGGGGCGGGTGAGCGGGTAGGATGGACTGACATTTT
AGGCACAGATTTACATACATGCTCAGATCCACAACTCAGAAAGCAGTTCT
TCCAGAAAGACTTACAGAAAGAGGCTACAATGGACTGGGTACTGACAGAA
GAATAGACCCT

Query= MSMg01no110_g20.b1 MSMg01no110_g20.b1 CHROMAT_FILE:
MSMg01no110_g20.b1 PHD_FILE: MSMg01no110_g20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:01 2005
         (373 letters)



>mm_chr1_158426748_158427520
          Length = 773

 Score =  630 bits (326), Expect = 0.0
 Identities = 345/356 (96%), Gaps = 8/356 (2%)
 Strand = Plus / Minus

                                                                       
Query: 15  gcctgcctaacctgcttggctagctcaagaccaccgaaagaccctgttgcaaagaataag 74
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 gcctgcctaacctgcttggctagctcaagaccaccgaaagaccctgttgcaaagaataag 714

                                                                       
Query: 75  gtggaaagctcctaaggaatgacacttgagcctaatctggcctacacacacacacacaca 134
           |||||||||||||||||||||||||||||||||||||||||||        |||||||||
Sbjct: 713 gtggaaagctcctaaggaatgacacttgagcctaatctggcct--------acacacaca 662

                                                                       
Query: 135 cacacacacacacacacacacacacacacacacatacacacgcacaccattcatacacat 194
           |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 661 cacacacacacacacacacacacacacacatacatacacacgcacgccattcatacacat 602

                                                                       
Query: 195 gcacaaatatgaatacccacacatacatacatataaagatacacagtggaagctctatac 254
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gcacaaatatgaatacccacacatacatacatataaagatacacagtggaagctctatac 542

                                                                       
Query: 255 atcacacacacacatgattgtgacactaattagaaaatacgccaacagtttgtacctgac 314
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 atcacacacacacatgattgtgacactaattagaaaatacgccaacagtttgtacctgac 482

                                                                   
Query: 315 catgtactgacataaggcttgagggatttcagctggtgatgtaacattgttcatcg 370
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 catgtactgacgtaaggcttgagggatttcagctggtgatgtaacattgttcatcg 426


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space:   278096
Effective search space used:   278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no110_g20.g1 MSMg01no110_g20.g1 CHROMAT_FILE:
MSMg01no110_g20.g1 PHD_FILE: MSMg01no110_g20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:01 2005
         (577 letters)



>mm_chr1_158379818_158380798
          Length = 981

 Score =  922 bits (477), Expect = 0.0
 Identities = 513/531 (96%), Gaps = 14/531 (2%)
 Strand = Plus / Plus

                                                                       
Query: 53  ggcgacagaggaggaggcgacgacgaggaggaggaggcgacagaggaggcttcaggactg 112
           |||||||||||||||||||||      |||||||||||||||||||||||||||||||||
Sbjct: 259 ggcgacagaggaggaggcgac------gaggaggaggcgacagaggaggcttcaggactg 312

                                                                       
Query: 113 acctctgcatctctttatattaatttcaccaatggaccctaccggagggacagatgcaga 172
           |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 313 acctctgcatctctttgtattaatttcaccaatggaccctactggagggacagatgcaga 372

                                                                       
Query: 173 gggggaagaaagaagctgactagcaaagtgtttagatcatctaacaagcatcccagcact 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gggggaagaaagaagctgactagcaaagtgtttagatcatctaacaagcatcccagcact 432

                                                                       
Query: 233 tgggagactgaggcaggaggattgctggccattctgtatgtatctggggcatcctgggct 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgggagactgaggcaggaggattgctggccattctgtatgtatctggggcatcctgggct 492

                                                                       
Query: 293 acagaataagaccctgtttcaaagcaacagagaccaaatgaacagaaatccagggggaat 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 acagaataagaccctgtttcaaagcaacagagaccaaatgaacagaaatccagggggaat 552

                                                                       
Query: 353 gcactgtgtgtggagctccaatgagcgccgttttt-aaaaagcagaatctgactccagta 411
           |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 553 gcactgtgtgtggagctccaatgaacgccgttttttaaaaagcagaatctgactccagta 612

                                                                       
Query: 412 gtcacctgaaagatcc--agaacagaaaacaa---ggaacctacacaatagaagcccaag 466
           ||||||||||||||||  ||||||||||||||   |||||||||||||  ||||||||||
Sbjct: 613 gtcacctgaaagatcccgagaacagaaaacaacaaggaacctacacaa--gaagcccaag 670

                                                                       
Query: 467 tgctcaggggtggggcgggtgagcgggtaggatggactgacattttaggcacagatttac 526
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 671 tgctcaggggtggggcgggtgagccggtaggatggactgacattttaggcacagatttac 730

                                                              
Query: 527 atacatgctcagatccacaactcagaaagcagttcttccagaaagacttac 577
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 atacatgctcagatccacaactcagaaagcagttcttccagaaagacttac 781


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 981
Length adjustment: 10
Effective length of query: 567
Effective length of database: 971
Effective search space:   550557
Effective search space used:   550557
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)