Query= MSMg01no110_k24.b1 MSMg01no110_k24.b1 CHROMAT_FILE:
MSMg01no110_k24.b1 PHD_FILE: MSMg01no110_k24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:21 2005
(651 letters)
>mm_chr1_104070335_104071385
Length = 1051
Score = 1096 bits (567), Expect = 0.0
Identities = 573/575 (99%)
Strand = Plus / Minus
Query: 77 tggggtaagcttgaggttgtacaactcacttctttagcctctgttccctaactgaggata 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1051 tggggtaagcttgaggttgtacaactcacttctttagcctctgttccctaactgaggata 992
Query: 137 ttatgtgccatgttgctatcatgtcttctctactatgatgaactatatcatcctagaact 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 991 ttatgtgccatgttgctatcatgtcttctctactatgatgaactatatcatcctagaact 932
Query: 197 gcagagacaaaataaacccattttccattaagttacttttgtcagtgtcctttatcacag 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 931 gcagagacaaaataaacccattttccattaagttacttttgtcagtgtcctttatcacag 872
Query: 257 acacaaaaataactaagccaaggacaaaggtgatgtcactgccattgtacaattgacaag 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 acacaaaaataactaagccaaggacaaaggtgatgtcactgccattgtacaattgacaag 812
Query: 317 cttcctaattgcttcctaatatcagggctcagaactgttgctaagcgctatggatgctta 376
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 811 cttcctaattgcttcctaatatcagggctcagaactgttgctaagggccatggatgctta 752
Query: 377 gttgggaaaatataaatcactatgttgtgtcttttatgattaccaatgcagtagtactgg 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 gttgggaaaatataaatcactatgttgtgtcttttatgattaccaatgcagtagtactgg 692
Query: 437 tttttgttaatataacctaacagtaatttggtacaatttacataagacatctcattggac 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 tttttgttaatataacctaacagtaatttggtacaatttacataagacatctcattggac 632
Query: 497 aattaatattttaatatgaagtatatgtatttaacattgtctatatattttaatagctat 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 aattaatattttaatatgaagtatatgtatttaacattgtctatatattttaatagctat 572
Query: 557 caaaaagtttaaaaaaactaaatgattaaaatttatcttaaaggataagtgcagcatgcc 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 caaaaagtttaaaaaaactaaatgattaaaatttatcttaaaggataagtgcagcatgcc 512
Query: 617 aagactcaaatgtaggcatgtgtataaaacatacg 651
|||||||||||||||||||||||||||||||||||
Sbjct: 511 aagactcaaatgtaggcatgtgtataaaacatacg 477
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space: 667281
Effective search space used: 667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no110_k24.g1 MSMg01no110_k24.g1 CHROMAT_FILE:
MSMg01no110_k24.g1 PHD_FILE: MSMg01no110_k24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:21 2005
(609 letters)
>mm_chr1_104028890_104029899
Length = 1010
Score = 849 bits (439), Expect = 0.0
Identities = 553/611 (90%), Gaps = 35/611 (5%)
Strand = Plus / Plus
Query: 1 tcagaagcagtaggcctgtgatgcataaa-ctaggttaaccatcatgaagctataggagt 59
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 tcagaagcagtaggcctgtgatgcataaaactaggttaaccatcatgaagctataggagt 260
Query: 60 tatatactcatttagagttttagagttgtcagtcctattaacaataagccttggggcata 119
||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 tatatactcatttcgagctttagagttgtcagtcctattaacaataagccttggggcaca 320
Query: 120 taactgacctgagaagttgttctacacactgacgttagactcagctttatcaatatctaa 179
||||||||| |||||||||| |||| |||||||||||||||||| ||||||||||||||
Sbjct: 321 taactgacccgagaagttgtactacgcactgacgttagactcagagttatcaatatctaa 380
Query: 180 ggctgtgagttcagctcctatgaactgagggtgaggtcaccagccatcctatcaagctaa 239
|||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggctatgaggtcagcgcctatgaactgagggtgaggtcaccagccatcctatcaagctaa 440
Query: 240 atctcttgccttccaaactagtttgtgctacgcttgctgctagggtttaattcaggtgat 299
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 441 atctcttgccttccaaactagtttgtgctacacttgttgctagggtttaattcaggtgat 500
Query: 300 aattttagctgattacatttgttctttggcactggatcatgatcatgcacacacacacac 359
||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||
Sbjct: 501 aattttagctgattatatttgttctttggcactgggtcatgatca--cacacacacacac 558
Query: 360 acacacacacacacacacatacaaacacacacacacacacacacacacacacacacacac 419
||||||||||||||||||| ||||| |||||
Sbjct: 559 acacacacacacacacaca------------------------------cacactcacac 588
Query: 420 tgcattgtttactctcattgaccacttacatttatctcctactcttgtcttcccctttct 479
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 589 tgcattgtttactctcattgaccacttacatttatctcctactcttgtcatcccctttct 648
Query: 480 ccttagaggtgcctttttttccatattcttgtcctttttcattgttctgtggcccattta 539
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 649 ccttagaggtgcctttttt-ccatattcttgtcctttttaattgttctgtggcccattta 707
Query: 540 tattgaacaggactgtttt-gtgaccatgagttagaaactatccattggaatctagtggg 598
|||||| |||||||||||| ||| ||||||||| ||||||||||||||||| |||||| |
Sbjct: 708 tattgaccaggactgtttttgtggccatgagttcgaaactatccattggaacctagtgag 767
Query: 599 ctcacaattag 609
|||||||||||
Sbjct: 768 ctcacaattag 778
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 72
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1010
Length adjustment: 10
Effective length of query: 599
Effective length of database: 1000
Effective search space: 599000
Effective search space used: 599000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
