BAC Information

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BAC

Clone NameMSMg01-110O02
Chromosome1 (Build37)
Map Location 66,961,633 - 66,962,237
singlet/doubletsinglet
Overlap genenone
Upstream geneCrygf, LOC667781, EG667786, Mtap2, C030018G13Rik, Rpe, 1110028C15Rik, Acadl
Downstream geneMyl1, LOC100043192, Lancl1, Cps1, Kif22-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-110O02.T7 (MSMg01no110_o02.b1)MSMg01-110O02.TJ (MSMg01no110_o02.g1)
ACCAG323693AG323694
length7221,381
length of high quality
(start - end)
609 (60 - 668)---
definitionCHROMAT_FILE: MSMg01no110_o02.b1 PHD_FILE: MSMg01no110_o02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:36 2005CHROMAT_FILE: MSMg01no110_o02.g1 PHD_FILE: MSMg01no110_o02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATACCTCAAATCGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCGCGGAATTCTCAGACTTCCACAAAGGGAACAAAATCTATC
ACTATTTAATCTAATAAACTTAGTGACTCTCAGACACTGTTTGGATTTGG
ATCAATAATTCAATTTCAAACTGCTTTCATTTTAGCAAATAAAACACAAT
AGAAGTTTGTGCTACAAAATGCATGTGTTGTTTCCTGTAGTCTGGGAATT
CAAGACTATCTTGGGCAGCGAGCAAGACACTGGGGAGCACCGCAGTCTCC
TCACAGAGCTTCATGACTGCCAAGTAGGACTTTGCAAGGAGGGTGGGTTT
TCCTTCATTTGCGGGTATTCCTCCATTTCTTTCATTATTTCAAATAGTAG
GAAGTCCCAGGTTTCTTTGCCTATTTTGGAGGCTGTTATATGATGGGTAT
ACTATCCATGACAATAGTAAAGCAAAATGGAAGTCTTTGCTTAAGTAGAG
CCTCCGCATTTGTATTTTCCTTTGGCAGTCATGAAACTGAGAATACATCT
AAAATATTTTCTTCAAACTGTCCCACACACATTATATACATTTTTATTTC
TCTATATCCTTTTTAATCTGACTTTCTACTTTTATTCCCAACTTCCTTAC
TGAAAGTACTTTTATTGTTAGTCACAGCAAACCTGTTTGGTGCCATAAAT
TGTAATAAGCATACCTGACAGG
CATAAAATGAATAGGANNNNTNNTNNNNNTCGGGGAGGGGGGTAATNTNN
CCTATTATTTCGTAACAGAATTACAAGAATAATGCGCAGAGGCTATTAAA
GACCCGTGTAATATATCACTAACAACACCATATAATTCCGCTCCGCGCAG
CGAGGTGTGTGCTCTCTAATGGACAAGCGGTGAGTAGCGATGTATCCGTA
AAGATATCACCAACTATTAATCATACAACACTAGACATAACGAGCGAAGA
CAAAAGAACATATTTATTAGAGCGGCTCCAGGGTGTAGCGCGCGCTGTGA
GAGTGCGGCGACGGACGATAAATATTTTATNCTCACTATTATATATATCA
ATACAGAACAACGAATATATACGAGCGCAGAGACTATGGTCGTACGGTTC
GTGGAGCGCACGCGCCGTGATGAAAGACCCAGCGGGGTGAGATAGGTATG
AGTCACAGCTAATATCATTGTCAATATATGCACTCGCGTAGCGTGACTAT
GTCTGGGTACTCTCCTCGCGGCACTTATGTATTGTGCGCGCGTGAGGCGA
GTAGTGTGCGTTATTATAGAGACGAGGAAGACTTAGAGACACGCTGTGCG
ACGTGGAGCGCTGAACGCGCAGAAGTAACATGCCATATCACCACGCGGTA
GATATAATCGGAGCGGAGAGAGGAGCGTGNATGAGAGAGTGGGCATGTGC
GGCAGACGCACCCTCGAGATCAGCAATCGAAGCACGGACGTGATCACGAT
GAAGCTGGATGAATATAGCGCGTCGAGGAGTGAGTATGTACGATACGCTC
AGATCTGACTCGCGCGTGATGCGCGTGTAANATGTCGCATTACTAGATCC
AACCACGAGCGGCCACGCCGATCGGTATTAACTACGCACCACCGCCGCGA
TTCATTGTATGCGCGTGTGTTGTATGAGAGTCGAATTAGACGCAGCGCAG
CACGACGCCTGGTAGTGCGCGGGAGCAACTATATATGACGTAGTAGTCGT
AGCGCGCGCATGAGATATATATATGCGCGCGAGACAGGCCTACAGACTAT
ACACACATACCGTATATATTCAGCGTTCGCATGAGNACGCGCACAGCTTA
TACTAATACATACGCACAGCGACTTATGGTCGTACTGAGTCNTCGTGACG
ACCCCAGAGATCGTGAGAGACGATGTAGCGTGATACGACGTAGTATACAC
TACAANATTATANTGATATAATATACATATTCACCATAGACCAGAGGTAT
CACACCGCAGATGTAACCGCGTCGANCTATTTCTATGCTCGGATAGTATA
CTCCGCNTCCGCNCCGACTNACGTGTTGCTTCTGTGTTATCTNTATACAN
CAGCAGCGTGTGGATATGGCACGTCNAGGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no110_o02.b1 MSMg01no110_o02.b1 CHROMAT_FILE:
MSMg01no110_o02.b1 PHD_FILE: MSMg01no110_o02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:36 2005
         (609 letters)



>mm_chr1_66961429_66962437
          Length = 1009

 Score = 1170 bits (605), Expect = 0.0
 Identities = 605/605 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcagacttccacaaagggaacaaaatctatcactatttaatctaataaacttag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 gaattctcagacttccacaaagggaacaaaatctatcactatttaatctaataaacttag 750

                                                                       
Query: 65  tgactctcagacactgtttggatttggatcaataattcaatttcaaactgctttcatttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 tgactctcagacactgtttggatttggatcaataattcaatttcaaactgctttcatttt 690

                                                                       
Query: 125 agcaaataaaacacaatagaagtttgtgctacaaaatgcatgtgttgtttcctgtagtct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 agcaaataaaacacaatagaagtttgtgctacaaaatgcatgtgttgtttcctgtagtct 630

                                                                       
Query: 185 gggaattcaagactatcttgggcagcgagcaagacactggggagcaccgcagtctcctca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 gggaattcaagactatcttgggcagcgagcaagacactggggagcaccgcagtctcctca 570

                                                                       
Query: 245 cagagcttcatgactgccaagtaggactttgcaaggagggtgggttttccttcatttgcg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 cagagcttcatgactgccaagtaggactttgcaaggagggtgggttttccttcatttgcg 510

                                                                       
Query: 305 ggtattcctccatttctttcattatttcaaatagtaggaagtcccaggtttctttgccta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ggtattcctccatttctttcattatttcaaatagtaggaagtcccaggtttctttgccta 450

                                                                       
Query: 365 ttttggaggctgttatatgatgggtatactatccatgacaatagtaaagcaaaatggaag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ttttggaggctgttatatgatgggtatactatccatgacaatagtaaagcaaaatggaag 390

                                                                       
Query: 425 tctttgcttaagtagagcctccgcatttgtattttcctttggcagtcatgaaactgagaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tctttgcttaagtagagcctccgcatttgtattttcctttggcagtcatgaaactgagaa 330

                                                                       
Query: 485 tacatctaaaatattttcttcaaactgtcccacacacattatatacatttttatttctct 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tacatctaaaatattttcttcaaactgtcccacacacattatatacatttttatttctct 270

                                                                       
Query: 545 atatcctttttaatctgactttctacttttattcccaacttccttactgaaagtactttt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 atatcctttttaatctgactttctacttttattcccaacttccttactgaaagtactttt 210

                
Query: 605 attgt 609
           |||||
Sbjct: 209 attgt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space:   598401
Effective search space used:   598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)