BAC Information

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BAC

Clone NameMSMg01-111B09
Chromosome1 (Build37)
Map Location 139,142,681 - 139,143,256
singlet/doubletsinglet
Overlap geneLOC100042567
Upstream geneGpr25, Camsap1l1, 9230116N13Rik, Ddx59, Kif14, Zfp281, LOC667686, EG623818, Nr5a2, Rnu7-ps3
Downstream geneLOC100043143, Ptprc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-111B09.T7 (MSMg01no111_b09.b1)MSMg01-111B09.TJ (MSMg01no111_b09.g1)
ACCAG323845AG323846
length1,1561,194
length of high quality
(start - end)
563 (75 - 637)575 (111 - 685)
definitionCHROMAT_FILE: MSMg01no111_b09.b1 PHD_FILE: MSMg01no111_b09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:57 2005CHROMAT_FILE: MSMg01no111_b09.g1 PHD_FILE: MSMg01no111_b09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:14:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATGGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGGT
GTAATGCTGGCCTTTAAGGCTTCATGTGTTACTTTGACCTTTTTCCCTTA
CCCTTTATAATATTCTGTCATTATTTAGTGCATTTGTTGTTCTGATAATT
ATGTGTCTGGAGGAATTTCTTTTCTGGTCCACTCTATTTGGAGTCCTGTA
GGCTTCTTGTATGTTCATGGGCATCTCTTTCTTTAGGTTAAAGAAGTTTT
CTTCTATAGTTTTGTTGAAGATATTTACTGGCTCTTTAGGATGGGAATCT
AACCTCTAATCTCTTCTATACCTATCATCCTTACATTTGATCTTCTCATT
GTGTCCTGAATTTCCTGAATGTTTTGGGTTAGGAGCTTTGTGCATTTTGC
ATTTTCTTTGACTATTGTGTCAATGTTTTCTATGGTATCTTCTGCACCTG
AGATTCTCTCTTCTATATCTTGTATTATGTTGGTGATGCTTGCATCTATG
ACTCCTGATCTCTTTCCTAGGTTTTCTATCTCCAGGGTTGTCTCCCTTTG
TGATTTCTTTATTGTTTCTATTTCCATTTTTAGATCCTGAATGATTTTAT
TCAATTCCTTCATCTGTTTGCTTGTGTTTCCTGCAATTCTTTAAGGGATT
TTTTGTTTCCTCTTTAAGGGCTTCAAGCTGTTTACCTGTGTTCTCCTGTA
TTTTCTTTAAGGGAGTTATTTGTGTCCTTTTTAAAGTCCTCTATCATCAT
CATTGAAAGTGATTTTAAATCAGTCTTTGTTTTTCCGGTGTGTTCGTGTA
TTCTGGGTTCACTGTGATGGGAGAACTGGTTTCTGATGATGCCTAATAAT
CCTGCGTTTCTTGTTGCTTAGGATCTTTGCCCCTTGCTTCTCACCATCTA
GTTATCTCTGGTGTTAACTGGTCCTTGCCATCTTTTGATTGTGGCCTTGG
TCCCTTCTGCAAACCTTCTGTGTTCATAAATTCCTGGTAAAAATCCTTTT
TCCCTTTCCAGGAAAAATTTTGGGGTAATGGGACCAATTTTTTGTGTCAA
TGGCTCCCGCTCTCCCAAAATTGCAATAATATAAACCTTTCTAATGAATT
CCTTGTGCCCTGGGGGTTGTGTTTCCTTTGTGGTTTCTTTGTGGTTCCCT
GTTTGA
TTTTCAGTGGAGCTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCCCTTTAAAGACTGCAGGTCTTTGTTTTGCCCTTAGCTG
TGCCCCTAGAACCTCCATGGGAGCCTGGCACATGACAGGAAGAGAAGAAA
TGTTTGTTAAATAAGTGGATGGATCAACGCATAATCATATTCATTATTAT
ATCTTTACCAAAACATTAAGAAGCATAATTGCCCACTTTACTAAGTACAT
CTGACTTAGAATTACGTTATACTATTTCCAAATAGCAAATGTTCTTTTAA
AAAGACAAAACTTGGTATTCATGAGCATTTAAAACAGCATGATACATATC
TCAAATATGATTATATGGAAATTCAGTTCTTTATAGGTTTTCTTTCAGAG
GAGTTGAAGTAAGATAATGCGTGGATGGAAATGGGTAGAAAATATGAAAA
CATTCCCTTTGAGGATATTTGAAGTTTGACTTACGGAATTAAACATCATA
TCTTAGAAGTTTGACAGGACATTTCATCTGTAATGTAGAGAAAAAAGTAT
TTTTTTTCCTACTCCAATACTTCTGTATTATCTGGCTTTCTGGGGCTCTC
ACAAATACACAAGATAATCAACTTACAGAGAGGAAAGGATTGTGCTGTCT
CATGGTTCTAAAGGTTTCAGTGCTGGCTAGTTGTGGCAGTAGTCTTGACA
GGATTTGTGGGGGAAACAAAGCCACCTTTTTCATGGGAGGTAAATAAAGG
AAACTTGAAGAAAAGTCCCTGGTCCCACAATCCCACAGGGCCTGTTACCA
ACAACCAAAAGGCATTTTCACTAGGCTCCTCCTCTTAAAGGGTCCTGCCC
ATCTTCCTGAAATACCCTGAAGCTGGTTACCAGACCTTTTACACCTTGGC
CCTTGAAATTTTTAAAATTTTTATTTTTTAAACTGTGCCTAATATCCTGT
CGAAAAATTATGTATTATGTTGCTTTGTGAATTACCGGGCCCTTGTTGTT
CAATCTTATTAAAGGGCAAATTTAAAAACAGGCCATTTTAAAAACCAGCC
TTGTATTCCCTTATCCTCTACATTTTTACATTAATTTGGGTAAAAATTCC
CGGTTTCTTTTTATTAGGGTTCTTTCCCTTATAATCTTTCCATCTTATAC
CTGGCTGTGACCTCTTTAAATCTCTGCCCCCTAGTGAAATGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no111_b09.g1 MSMg01no111_b09.g1 CHROMAT_FILE:
MSMg01no111_b09.g1 PHD_FILE: MSMg01no111_b09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:57 2005
         (575 letters)



>mm_chr1_139142481_139143456
          Length = 976

 Score = 1029 bits (532), Expect = 0.0
 Identities = 565/576 (98%), Gaps = 1/576 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acctccatgggagcctggcacatgacaggaagagaagaaatgtttgttaaataagtggat 60
           ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 acctccatgggagcctgacacatgacaggcagagaagaaatgtttgttaaataagtggat 260

                                                                       
Query: 61  ggatcaacgcataatcatattcattattatatctttaccaaaacattaagaagcataatt 120
           |||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 ggatcaacgcatgatcacattcattattatctctttaccaaaacattaagaagcataatt 320

                                                                       
Query: 121 gcccactttactaagtacatctgacttagaattacgttatactatttccaaatagcaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcccactttactaagtacatctgacttagaattacgttatactatttccaaatagcaaat 380

                                                                       
Query: 181 gttcttttaaaaagacaaaacttggtattcatgagcatttaaaacagcatgatacatatc 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 gttcttttaaaaagagaaaacttggtattcatgagcatttaaaacagcatgatacgtatc 440

                                                                       
Query: 241 tcaaatatgattatatggaaattcagttctttataggtttt-ctttcagaggagttgaag 299
           ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 441 tcaaatatgattatatggaaattgagttctttataggtttttctttcagaggagttgaag 500

                                                                       
Query: 300 taagataatgcgtggatggaaatgggtagaaaatatgaaaacattccctttgaggatatt 359
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 taagataatgcgtggatggaaatgggtagaaaatatgaaaacattccctttggggatatt 560

                                                                       
Query: 360 tgaagtttgacttacggaattaaacatcatatcttagaagtttgacaggacatttcatct 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgaagtttgacttacggaattaaacatcatatcttagaagtttgacaggacatttcatct 620

                                                                       
Query: 420 gtaatgtagagaaaaaagtattttttttcctactccaatacttctgtattatctggcttt 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtaatgtagagaaaaaagtattttttttcctactccaatacttctgtattatctggcttt 680

                                                                       
Query: 480 ctggggctctcacaaatacacaagataatcaacttacagagaggaaaggattgtgctgtc 539
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctggggctctcacaaatacacacgataatcaacttacagagaggaaaggattgtgctgtc 740

                                               
Query: 540 tcatggttctaaaggtttcagtgctggctagttgtg 575
           ||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcatggttctaaaggtttcagtgctggctagttgtg 776


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 976
Length adjustment: 10
Effective length of query: 565
Effective length of database: 966
Effective search space:   545790
Effective search space used:   545790
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)