BAC Information

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BAC

Clone NameMSMg01-111F01
Chromosome1 (Build37)
Map Location 87,483,010 - 87,483,477
singlet/doubletsinglet
Overlap geneSp110
Upstream geneLOC100040213, LOC100039794, EG665338
Downstream geneSp140, Sp100, A630001G21Rik, Cab39, Itm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik, Psmd1, Htr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-111F01.T7 (MSMg01no111_f01.b1)MSMg01-111F01.TJ (MSMg01no111_f01.g1)
ACCAG324018AG324019
length1,1551,184
length of high quality
(start - end)
468 (117 - 584)328 (119 - 446)
definitionCHROMAT_FILE: MSMg01no111_f01.b1 PHD_FILE: MSMg01no111_f01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:15:28 2005CHROMAT_FILE: MSMg01no111_f01.g1 PHD_FILE: MSMg01no111_f01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:15:28 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TGGCTATGGGGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAC
TATGTTTTTGACCCTTTAAAGCGCACTTGCACGCGGGNATATGTGTATGA
TTCCTTTCCAAGTTATCTCTCTGATCTCAACCCTAACCTTTTAAAATGAC
CAGCTGGGAAGGAAGAAGAGATCAGAGTTTTGAACTAGAAGGAGCAAGCT
TCAAGGACAAGTGTTAAAATGAGAATTCTTTGAATCAGTTCTTGGGAAAT
TAAGCTAGGGAACAGATAATGGTAGAGCCTAAGGATGACTTCTGGGCATG
AGAAACCAAGAATTTGTGAAGGGAAAACAAGAACCAGACATGAGGAGATA
AAGACTTGAGCAGCTGGAGTATTGGATCGTTTGCCTGCTATCCCAGCACT
TGAAAGCATCCAGGACCATGGAAAGAACTGAGGTGGGAGAAAACGGACTT
GGAAGGCTTCCAGGAAGCAATGGGGAAACCAATGGATGACAGTATCAGAA
AGGTCACAGTGTTTTTATCATTATTATCATTATCATAATTATGACATTTA
TCAGTATGTGGAGGTTGGGCATACGTTCCATGGTACACATGGAGAGGCCA
AGAAACCAACTTGTGAGTTGGGTCCCTTCTTCCACCATATGGGTTTCAGG
GATCAAATTCAGTTCACCAGGCTTGGTGGCAAGGACCTTGATCCTGTGAG
CCACTTGCCAGACCATTGACACATTTTAATTGACTGGTGACATCTCAGAG
TACAAGATGCCAGAGCGCCAAAGGCGAGGTGGGAATACGTAGTCCGCAGT
ACATCCCACCTGCTTGCCCCCATGACGTTTAACTGACCGATAATGGATTG
TTGCCTGCCCTAGATTTACCTGGAAATCATTTTCCTTCTGTGGGAGGCTT
AGTGTACCAGTTTTTCCCCAGCTACTTGTGTCATGGTAAGTTCCCGTGTA
TTTTGATTCACGGCTTTGGTTCATTATGTTCTAATTGGCCCTCCTCGGTA
TCCTCTAAAATTTTTGGCAAACCCCTTTTGAATTATATGCCTTATCTTTT
ATCATAAAAATGTCGCGTACTTGTCCCTGGGGGTATTGCCACTACTCCCC
CCTTGGTATTGCCTCCTTCACTCCTGGCTATTGCCTATGGTACGTCGNCT
TATTA
NNTTCCGCATGGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCCTTTAAAGACCGGGGCTTCATGGACCTAAAAAACA
GAGGCCGTTGCAGTGTGAGCCACCTTGTCAGAAAGATATTAAGGAAGGAA
ATAACAAGATTTAGAGAGTGGTGATTTCATGGCAAGATCCCACCAGCTAA
GTTTATTGTTTGGACTACTCAGGCAGATTCCTGAATTCAAGGTTAGCTTG
GGACAGAGCTAGTTGAAGCCCAGGAGTGGTGGGGATCCCACCCAGCTAGC
TTATTGTCTTTACTTATAGCAAGCAGATATCTGAATTCATTTGCCATGTT
TTGTTTTATTTTGTTTTTTAAGAATTTGCTGTTCTTTTATTATTATCAAG
TTGCTACAGTCATAAAATGCTGACTCATGGGATAACCAAAAAAGAACCTC
AAGAACATGACTGAATTGATATGCAAATGAAAGACTGGGCTTTGGTCTGC
AAGAGCTAAGCAACCTGGATGAGCTGTCTGGAGAGAAAACAGAGTTCTTT
TAGAATTTTTTTCTAGCAGCTACCCAGAGAGAACTGCTTGGAGAGCAAAT
ACAGGTCTTTTACAATCTTTTTCCTGCAAGAGAGCTTAAGAGAGCTGTCT
CAGGCAGAGGAAACTGTCTCATGCAGAAAACTGTCTTGAGCAGAAAGCTA
TCTTGAGCATACTACAGATCCAAGAGCTATCTAGAGAGAGCTGTCTAGGG
AGCCATCTTGAGCAGATTACAAGGCTAATCCACCTTGTACCCCATGATTT
GACTTTTTAGTCCTTTTTTTGGTTGGTGGTGAACATTCTCCTTCCTTCAT
AATCCCTTTCCAAGTTGAGGTCTGATCCTTATCTGAAACTCCTTAATGTT
TAGATTCCCATTAATTCCAAATAACCCCCTTTAAAAAAATGAGGTTTCAT
TATCTTTATATTTTAATAAATTTTCTACCTAAGGGATATCTTGAAATGGG
CTTAAAAAAACCCTCCTTAAGAAAATTGGTTCCAATATTCCTTTTAATTC
TTTCAGGGAAAATTGGCTAAATCCAAAATACACACTTCTTGAAAATATTC
CCACCTTTTACACACCTCTTCTCATAAAAGGGGTCTATAAACATTCCTTA
CAACTTTCTCTTATGTAACCATACTCTTATTGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no111_f01.b1 MSMg01no111_f01.b1 CHROMAT_FILE:
MSMg01no111_f01.b1 PHD_FILE: MSMg01no111_f01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:15:28 2005
         (468 letters)



>mm_chr1_87482810_87483677
          Length = 868

 Score =  882 bits (456), Expect = 0.0
 Identities = 465/468 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctctctgatctcaaccctaaccttttaaaatgaccagctgggaaggaagaagagatcaga 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 ctctctgatctcaaccctaacctttttaaatgaccagctgggaaggaagaagagatcaga 260

                                                                       
Query: 61  gttttgaactagaaggagcaagcttcaaggacaagtgttaaaatgagaattctttgaatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttttgaactagaaggagcaagcttcaaggacaagtgttaaaatgagaattctttgaatc 320

                                                                       
Query: 121 agttcttgggaaattaagctagggaacagataatggtagagcctaaggatgacttctggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agttcttgggaaattaagctagggaacagataatggtagagcctaaggatgacttctggg 380

                                                                       
Query: 181 catgagaaaccaagaatttgtgaagggaaaacaagaaccagacatgaggagataaagact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catgagaaaccaagaatttgtgaagggaaaacaagaaccagacatgaggagataaagact 440

                                                                       
Query: 241 tgagcagctggagtattggatcgtttgcctgctatcccagcacttgaaagcatccaggac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgagcagctggagtattggatcgtttgcctgctatcccagcacttgaaagcatccaggac 500

                                                                       
Query: 301 catggaaagaactgaggtgggagaaaacggacttggaaggcttccaggaagcaatgggga 360
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catggaaagaaccgaggtgggagaaaacggacttggaaggcttccaggaagcaatgggga 560

                                                                       
Query: 361 aaccaatggatgacagtatcagaaaggtcacagtgtttttatcattattatcattatcat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaccaatggatgacagtatcagaaaggtcacagtgtttttatcattattatcattatcat 620

                                                           
Query: 421 aattatgacatttatcagtatgtggaggttgggcatacgttccatggt 468
           ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 621 aattatgacatttatcagtatgtggaggttgggcatatgttccatggt 668


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space:   392964
Effective search space used:   392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)