Query= MSMg01no111_i13.b1 MSMg01no111_i13.b1 CHROMAT_FILE:
MSMg01no111_i13.b1 PHD_FILE: MSMg01no111_i13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:15:59 2005
(603 letters)
>mm_chr1_180111510_180112512
Length = 1003
Score = 1143 bits (591), Expect = 0.0
Identities = 594/595 (99%)
Strand = Plus / Minus
Query: 1 tcttgagactgtccattttccatttccaaagtaccagccacccaaagagatagcacagct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 tcttgagactgtccattttccatttccaaagtaccagccacccaaagagatagcacagct 536
Query: 61 tggaatgtcaagggatcccttttaatctgcatgtctttagttttggaatgacttttgtta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 tggaatgtcaagggatcccttttaatctgcatgtctttagttttggaatgacttttgtta 476
Query: 121 gtgatgaccaccaacttgtgtcttcccagatggaaaggaaagtgtttggcaaagtctttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 gtgatgaccaccaacttgtgtcttcccagatggaaaggaaagtgtttggcaaagtctttg 416
Query: 181 aaaatagcagctcatgttaccactactgtctgtgtttgatggcagtgatggctataatca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 aaaatagcagctcatgttaccactactgtctgtgtttgatggcagtgatggctataatca 356
Query: 241 actcctctaggctagtggagtttttgttgttgttgtattgtttttagaagcagggtttct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 actcctctaggctagtggagtttttgttgttgttgtattgtttttagaagcagggtttct 296
Query: 301 ctttgtagtctagcctttgtttgaattccccatccacttgctctgtcctgatcctgagaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 ctttgtagtctagcctttgtttgaattccccatccacttgctctgtcctgatcctgagaa 236
Query: 361 aagggattaaacctttttttaaaaaaagtcctacagggcagtggtggttcaagcctttaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 aagggattaaacctttttttaaaaaaagtcctacagggcagtggtggttcaagcctttaa 176
Query: 421 tcgcagcacttaggaggcagcggtcaaggcaggcagattcctgagtttgaggccagcttg 480
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 tcccagcacttaggaggcagcggtcaaggcaggcagattcctgagtttgaggccagcttg 116
Query: 481 gtctacagagtgagttcaaggacagcagggctacacagagaaaccctgtctagaaaaaac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 gtctacagagtgagttcaaggacagcagggctacacagagaaaccctgtctagaaaaaac 56
Query: 541 aataaaaaaattaaaaatataaaaataaaaataagccctttgtttatattctttt 595
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55 aataaaaaaattaaaaatataaaaataaaaataagccctttgtttatattctttt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space: 588849
Effective search space used: 588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no111_i13.g1 MSMg01no111_i13.g1 CHROMAT_FILE:
MSMg01no111_i13.g1 PHD_FILE: MSMg01no111_i13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:15:59 2005
(530 letters)
>mm_chr1_179752624_179753553
Length = 930
Score = 891 bits (461), Expect = 0.0
Identities = 512/529 (96%), Gaps = 4/529 (0%)
Strand = Plus / Plus
Query: 1 acattcaagttttccctctacattggaatcccgaagaagtcggtctaacaccaggaaagg 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 acattcaagttttccctctacattggaatcctgaagaagtcggtctaacaccaggaaagg 260
Query: 61 aatgtcttagcaacaggatagattcacttaacaccaagaatgagagttaacaggtaaaaa 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 aatgtcttagcaacaggatagattcacttaacaccaagaatcagagttaacaggtaaaaa 320
Query: 121 gcaatagctttcttattcatttcttgatccaatcaagaaaaccccatcctgtctacccag 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaatagctttcttattcatttcttgatccaatcaagaaaaccccatcctgtctacccag 380
Query: 181 ctccttaggttatatttgattctagatatgatgaagctcatgaccaagattcgccaggac 240
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 381 ctccttaggttatatttgattctagatatgatgaagttcatgaccaagatttgccaggac 440
Query: 241 aacagagggttataagcattatatttttt-cctacaactaaatgttattttctttctaca 299
|||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 441 aacagaggtttataagcattatatttttttcctacaactaaatgctattttctttctaca 500
Query: 300 aactcctctttgtctttttcagaaa-aatctcccttcttctggggggatgttctcttatt 358
|||||||||||||||||| || ||| |||||||||||||||||||| |||||||||||||
Sbjct: 501 aactcctctttgtctttt-caaaaataatctcccttcttctgggggaatgttctcttatt 559
Query: 359 cttataatgacaactgggtttgttttcaaatatatttcttttacacacatctaatgttat 418
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 560 cttataatgacaactgggtttgttttcaaatatatttcttttacaaacatctaatgttat 619
Query: 419 aaatatccttttagccattatttatgtgatatatggtaaaatttgataacataaaatgct 478
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aaatatccttttagccattacttatgtgatatatggtaaaatttgataacataaaatgct 679
Query: 479 accactgatttttttcaagtattattagacttacattgattgttttctt 527
| |||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 680 atcactgatttttt-caagtattattagaattacattgattgttttctt 727
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space: 478400
Effective search space used: 478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
