Query= MSMg01no111_j16.b1 MSMg01no111_j16.b1 CHROMAT_FILE:
MSMg01no111_j16.b1 PHD_FILE: MSMg01no111_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:09 2005
(703 letters)
>mm_chr1_6464550_6465652
Length = 1103
Score = 1336 bits (691), Expect = 0.0
Identities = 700/703 (99%)
Strand = Plus / Plus
Query: 1 agccctttgttgtagaagtacaatagcccaccttaaagaaatgacctgcagtttccctgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agccctttgttgtagaagtacaatagcccaccttaaagaaatgacctgcagtttccctgc 260
Query: 61 agaattcccatataaatgaaaaatgtcttctatattttaattctaagtaaacttacaatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaattcccatataaatgaaaaatgtcttctatattttaattctaagtaaacttacaatg 320
Query: 121 ttagcaagcagcaagtcctcatgtttttagcaattttatcattttgagataaatacagtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttagcaagcagcaagtcctcatgtttttagcaattttatcattttgagataaatacagtc 380
Query: 181 atcagtccattttgatgcaagtacaagactcagttgccattagaaagcacattgcatttt 240
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 atcagtccattttgatgcaactacaagactcaggtgccattagaaagcacattgcatttt 440
Query: 241 tttttttatgaactgtctgtcatgtgcctaatctctaccttggtttgtattattaatttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttttttatgaactgtctgtcatgtgcctaatctctaccttggtttgtattattaatttt 500
Query: 301 tttgccaatcattagttaacagaaatgctttttaaaatcattcccaataagccaaagcat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttgccaatcattagttaacagaaatgctttttaaaatcattcccaataagccaaagcat 560
Query: 361 ttaaaaaaataatttgctcaacttcagagaggtccaacatctcaagtacaaaactggcaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttaaaaaaataatttgctcaacttcagagaggtccaacatctcaagtacaaaactggcaa 620
Query: 421 ttaatgctcattgtttgaataccccaaaatgattagatgctcccatgagggagaaatttg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttaatgctcattgtttgaataccccaaaatgattagatgctcccatgagggagaaatttg 680
Query: 481 aagtggccacatttggtaccaggtgtttgagtaaagggtgttatttgtcttgagatgtaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aagtggccacatttggtaccaggtgtttgagtaaagggtgttatttgtcttgagatgtaa 740
Query: 541 ttggggtcagctatgcaataaagaggtttaaactttatacctcagctattattactgggc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttggggtcagctatgcaataaagaggtttaaactttatacctcagctattattactgggc 800
Query: 601 cagcctcaatccctttcatcaaactctggttccattaccacagtaacaatcattttctca 660
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cagtctcaatccctttcatcaaactctggttccattaccacagtaacaatcattttctca 860
Query: 661 ctgggagttatcaataagattatagttattgtcagaacctgtt 703
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 ctgggagttatcaataagattatagttattgtcagaacctgtt 903
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 703
Length of database: 1103
Length adjustment: 10
Effective length of query: 693
Effective length of database: 1093
Effective search space: 757449
Effective search space used: 757449
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no111_j16.g1 MSMg01no111_j16.g1 CHROMAT_FILE:
MSMg01no111_j16.g1 PHD_FILE: MSMg01no111_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:09 2005
(559 letters)
>mm_chr1_6588454_6589413
Length = 960
Score = 1056 bits (546), Expect = 0.0
Identities = 552/554 (99%), Gaps = 1/554 (0%)
Strand = Plus / Minus
Query: 1 cagttattcagatacatttcttacctaggatgcaactgggctcaagggacaggttatggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 cagttattcagatacatttcttacctaggatgcaactgggctcaagggacaggttatggt 695
Query: 61 ttcaactgaaagaagacaatgaattaaaaggaagaggaaaaggattcagtgaacattaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 ttcaactgaaagaagacaatgaattaaaaggaagaggaaaaggattcagtgaacattaag 635
Query: 121 aatcttgaaaaaagagaactgtag-aaaaaaaggataccaaagtcaagttatagaggaaa 179
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 634 aatcttgaaaaaagagaactgtagaaaaaaaaggataccaaagtcaagttatagaggaaa 575
Query: 180 gccaggaggaaggggagcaagagaaaatgagtaatcaagaaatataaagctcacctcaaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 gccaggaggaaggggagcaagagaaaatgagtaatcaagaaatataaagctcacctcaaa 515
Query: 240 tcacaaccatgacatacaacatagcaagggtagatctcacatttgtgacactgcatcaca 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 tcacaaccatgacatacaacatagcaagggtagatctcacatttgtgacactgcatcaca 455
Query: 300 atatgccaaacattttgtgtctacatttattgttattgataattacaactagacagtgct 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 atatgccaaacattttgtgtctacatttattgttattgataattacaactagacagtgct 395
Query: 360 catcagagcaaaaagggaaatttcaagactacttttataaagaaaaatgagtcctgtcag 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 catcagagcaaaaagggaaatttcaagactacttttataaagaaaaatgagtcctgtcag 335
Query: 420 gagagatcccacctggagattccacacttgggtgaatgctcacatggaaggcattactga 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 334 gagagatcccacctggagattccacacttgggtgaatgctcacatggaaggcattactaa 275
Query: 480 ctgacctaaacttactccacatttaggtttgaaacattgttttataccaggcaatgaagt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 ctgacctaaacttactccacatttaggtttgaaacattgttttataccaggcaatgaagt 215
Query: 540 agaagagtggccac 553
||||||||||||||
Sbjct: 214 agaagagtggccac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 960
Length adjustment: 10
Effective length of query: 549
Effective length of database: 950
Effective search space: 521550
Effective search space used: 521550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
