BAC Information

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BAC

Clone NameMSMg01-111K15
Chromosome1 (Build37)
Map Location 124,750,377 - 124,751,126
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666971
Downstream geneLOC666983, Dpp10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-111K15.T7 (MSMg01no111_k15.b1)MSMg01-111K15.TJ (MSMg01no111_k15.g1)
ACCAG324278AG324279
length1,1971,203
length of high quality
(start - end)		745 (88 - 832)529 (78 - 606)
definitionCHROMAT_FILE: MSMg01no111_k15.b1 PHD_FILE: MSMg01no111_k15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:16:16 2005CHROMAT_FILE: MSMg01no111_k15.g1 PHD_FILE: MSMg01no111_k15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:16:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTAATCTTNNNNNGGACATTGGGCGCTATAGACTCCTATAGGGAGAGGAT
CCGCGGAATTCTTAAAGAAGTCCATGGCCTTTAAAGAGAGAAAATGCTGG
ACAAAAGGGAAGCTTCTGCTCTCGGGGAAAGGTAAGCCTGGCTCTCCTTC
TCACCCCAAGAACATAAATCCTCACAACAAAGACTTGTTTATCCTATTCC
TTTTTATCCAATTCAGTGCCTTTTTTTTCCTTTTTAAAGAGAGGACTTTC
TGTATCCCATGTTGCCTTGAACTTCATGATTTTTCTCCCTTCTTACGTGC
TGATACCAGATGCCTGTGCCACCCTGACTGGTTATTGCCATGCTAGGGAT
AGAACCTCAGCTTCATGAATGCTAAGGAATCTCTGAAGCCAACTCAGCCA
CATGCCTAGCTCCAATGTCTGAATTTTTAACAACAACAACAAAAATGCAA
AATGTACAAACCACCAAAACCAATTATAGTGTGTCAGAGCCATTATCAAA
ACTAAACATTAAAAAAAAATTGAAAAGAACTTTCCATATGATCAGGCAGG
AATTGAATTTACTTTATTAAAAGAGTTTTTTTTTTGAAAAAATCATACAA
AAATATGTAGGCAATGCTTTCAGAGATATACAAATCCTAAGAAAGTGGTA
CAAGGACAGAATTTATTTTTTAAATGATGAAATATAAATAAAGAATGCCT
TGTGTTTCATCAGAGGTCAGATTCAGCAAGATTGAAGCTGGCTAAATAGG
AAGTTTCCAAAAGCCATAAGAAAACTGTGTAGCGACCAGCATATAAAGCA
TTAAAAACACCAACAGAGCAAAGACATGAAGCAGAAGAAATGTTTGAGCT
ATTACTGCCAAGGCCATCCCCAAATTAACTGCAGACATGGAACCACAGAC
ACAGGATACTTAAAGAGCTAACAAAAGGAGGAGTAACCAAACCCCACCAT
AACACCCACAAAAGGAATCTCTTATATTTAAAAAAACAGTCCCATCAGGG
AGCCCGCAAGATGGTTCAGTGAGATAAAAGGCACCTGATCCAAAACCGGG
CCCCCGGGGTTGAATCCCCCAAAAAATGTTTTTAAATTCCCAAAACTTGG
CCCTCGGAACCCCCACAGGATTTGCATGGTGATTGGGAAACAAACCAATA
AAAGCCTGAAACCTAAAAAGTGTAATATTATTTTAAATCCTCAGGGA

TTTTNGGCGAGGTGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTTTATCATGGCAGGGAAGATGTGCAACAGTCA
GTGAGTGCCTGGCACCTGAGCAGGAAGCTGGTCGCACACAGGAAGCAGAG
AAAGAACAAGAATAGAGGCGAATCTATTACACCCCAAAGCCCACTCCTAG
TGTTTTACTTCTTTTTTTCCCATTTTTTATTAGGTATTTAGCTCATTTAC
ATTTCCAATGCTATACCAAAAGTCCCCCATACCCACCCACCCCCACTCCC
CTACCCACCCACTCCCCCTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGT
ATATAAAGATTGTGTGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACT
AGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCTGGGGTACT
GGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCT
CCTTGGGTACTTTCTCTAGCTCCTTCATTGGGAGACCTGTGATCCATCCA
TTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCCGGCATAAT
CTCACACGAGACAGCTACATCTGGGTCCTTTCGATAAAATCTTGCTAGTG
TATGCAATGGTGTCAGCGTTTGGATGCTGATTATGGGGAGGATCCCTGGA
TATGGCAGTCTCTACATGTTCCATCCTTTCATCTCAGCTCCAAACTTTGT
CTCTGTAACTCCTTCCATGGGTGGGTACACTTCTAAGGAGGGGCATAGTG
TCCACACTTCATTCTTCCATTTTTCGTGAGTTTCATGTGTTTAGGAAATT
GTATCTTATATCTTGGGTATCCCAGGCTTGGGGCTAATATCCCCTCAACA
GTGAGTACATATTGGGTGAATTCCCTTGTGAATGTGCTACCTCCACCCTG
GAGGATGGCCCCCAGGTCCCTCCCATTTGGCTTAGAACTTTTCATAAATT
CCTTCCTTTTTTATAGCCTGAATAAGTACCCCCCTTGGGGTAAAATGTCC
CCAAATTTTTTTGGACCCCTATTCCCCTGTTTGAGAGGGGTCTCCTTGGG
GTTCTTTCTCCGCTCTTTTTGGGATATTTTTATAAAAATAGGGTTGTTAT
TGTACTCCATTAGGGGTATCTTTGTGTGTCTCTTTCTTTACCCGTGTGTG
GTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no111_k15.b1 MSMg01no111_k15.b1 CHROMAT_FILE:
MSMg01no111_k15.b1 PHD_FILE: MSMg01no111_k15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:16 2005
         (745 letters)



>mm_chr1_124750177_124751321
          Length = 1145

 Score = 1365 bits (706), Expect = 0.0
 Identities = 738/750 (98%), Gaps = 5/750 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagaaaatgctggacaaaagggaagcttctgctctcggggaaaggtaagcctggctctcc 60
           |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 201 gagaaaatgctggacaaaagggaagcttctgctcccgggaaaaggtaagcctggctctcc 260

                                                                       
Query: 61  ttctcaccccaagaacataaatcctcacaacaaagacttgtttatcctattcctttttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctcaccccaagaacataaatcctcacaacaaagacttgtttatcctattcctttttat 320

                                                                       
Query: 121 ccaattcagtgccttttttttcctttttaaagagaggactttctgtatcccatgttgcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaattcagtgccttttttttcctttttaaagagaggactttctgtatcccatgttgcct 380

                                                                       
Query: 181 tgaacttcatgatttttctcccttcttacgtgctgataccagatgcctgtgccaccctga 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaacttcatcatttttctcccttcttacgtgctgataccagatgcctgtgccaccctga 440

                                                                       
Query: 241 ctggttattgccatgctagggatagaacctcagcttcatgaatgctaaggaatctctgaa 300
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccggttattgccatgctagggatagaacctcagcttcatgaatgctaaggaatctctgaa 500

                                                                       
Query: 301 gccaactcagccacatgcctagctccaatgtctgaatttttaacaacaacaacaaaaatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gccaactcagccacatgcctagctccaatgtctgaatttttaacaacaacaacaaaaatg 560

                                                                       
Query: 361 caaaatgtacaaaccaccaaaaccaattatagtgtgtcagagccattatcaaaactaaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caaaatgtacaaaccaccaaaaccaattatagtgtgtcagagccattatcaaaactaaac 620

                                                                       
Query: 421 attaaaaaaaaa-ttgaaaagaactttccatatgatcaggcaggaattgaatttacttta 479
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attaaaaaaaaaattgaaaagaactttccatatgatcaggcaggaattgaatttacttta 680

                                                                       
Query: 480 ttaaaagagtttttttttt---gaaaaaa-tcatacaaaaatatgtaggcaatgctttca 535
           |||||||||||||||||||   ||||||| ||||||||||||||||||||||||||||||
Sbjct: 681 ttaaaagagtttttttttttttgaaaaaaatcatacaaaaatatgtaggcaatgctttca 740

                                                                       
Query: 536 gagatatacaaatcctaagaaagtggtacaaggacagaatttattttttaaatgatgaaa 595
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gagatatagaaatcctaagaaagtggtacaaggacagaatttattttttaaatgatgaaa 800

                                                                       
Query: 596 tataaataaagaatgccttgtgtttcatcagaggtcagattcagcaagattgaagctggc 655
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tataaataaagaatgccttgtgtttcatcagaggtcagattcagcaagattgaagctggc 860

                                                                       
Query: 656 taaataggaagtttccaaaagccataagaaaactgtgtagcgaccagcatataaagcatt 715
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 861 taaataggaagtttccaaaagccataagaaaactgcgtagcgaccagcatataaagcatt 920

                                         
Query: 716 aaaaacaccaacagagcaaagacatgaagc 745
           ||||||||||||||||||||||| ||||||
Sbjct: 921 aaaaacaccaacagagcaaagacttgaagc 950


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 745
Length of database: 1145
Length adjustment: 10
Effective length of query: 735
Effective length of database: 1135
Effective search space:   834225
Effective search space used:   834225
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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