BAC Information

Click to search

BAC

Clone NameMSMg01-111K18
Chromosome1 (Build37)
Map Location 28,144,875 - 28,145,625
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC677427, LOC100040952, EG433281
Downstream geneEG665903, Gm597, LOC435614, EG623924
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-111K18.T7 (MSMg01no111_k18.b1)MSMg01-111K18.TJ (MSMg01no111_k18.g1)
ACCAG324284AG324285
length1,1821,161
length of high quality
(start - end)		686 (82 - 767)769 (74 - 842)
definitionCHROMAT_FILE: MSMg01no111_k18.b1 PHD_FILE: MSMg01no111_k18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:16:17 2005CHROMAT_FILE: MSMg01no111_k18.g1 PHD_FILE: MSMg01no111_k18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:16:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAACTTTTNNNGGTCAGTGCGCGCTATAGACTCCTAAGGGAGAGGATCCG
CGGAATTCATACTCAGCTATACGCCTTTTAAAAGCCACCCTGGGTGACAT
GAAACCTTGTGTATCATAATGATCCAAAACAGAAAATTAAAATGCCACCC
AAAGGTATTAGAAATAATGAAATAGCAGTGTTGTAAAATATAAATCTACA
TATAAAATTTAGCTTGTTTATATGTGGTTATAATCAAGTCTTTGAAATAA
AACATAAAATAAACCTACTTTCAATGACCAAAAATATGGGATACCTAGGA
ATGAATTTAAACACATAGTTGAAAGCTATCAATAATAATACTGTAAGGCT
TGATGAAAATCATTAAAGAAGACATAAACAGACAGGTTTCCTGTATCCAT
GGGTTAAAATATTTAATGTTCTCAAAATTATCATATTTCTTAAATTAGTA
AAAATATTCAGTATAATTCACATAACCATTCCATTGCTTACCTAATATCA
AGAAATTATCCCTGGGATCAAAAGTGTGGAAAGCCGGTACGTGCTGCGAG
CAATCGCATGTGTGCCGCCAGTAATCTCTGAGGCGAGCTGTGTGTGCCGC
GAGCAATCGCCATTATAAGATGGCGCGGGCCTCCGCTGTGCCTAACTAGT
AAACAAGCCTTGTACGCAGGTGCAAGAGTGAATTCACTCCTAGTCACTCC
CATTCTCGGGGTGTAATAGTGGGGTGATGGGCAAGCAACGAACCAGGAGC
TGTCACGCCATATCAGGTGCTGAAACGTCACGCTGCGGGTTATAAAAGCA
GCGCCATTTTCCCGGTTTGGCGTCTTCCTGAGAAGCAAGCAATAAAGCTT
TTGCCGCGGAAGATTCTGGTTTGTTGCATCTTTCTTGCCGGTCGAGCGGG
ACGCAATAAGTGGCACCGAAGAACCCGGGAACTTTCTTCACACCGGTGCA
AGGAAAACCCTCGTTTCTCGGGCAATAATCAAACCCGTGGTAAAAAAAGT
TTCTACAAGGTACCGAAAAATCTTGGAAATTTCCCCCAAATTAAAAAACC
CTTTTTGAATTGTTTTGGCCCGGCCAAATAACCCTTTTCCCTTTCCGATT
TTCATTTTTGTTTTCCCCCCACTGGGAAACCTGCCGTAACTTGTTTCCTA
AAACATCCGTCCTTATGCTCTTGTGAATTATA

CTATATTTNNNAATCATGGNAGCTGGGGCGCCXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTTTATACCCCTAAGCCCCTTACCCCA
TAAAAACCCCTAGCTTTCGAGCCTTGTGGACGACATCCATTATCTCCTGT
GTGGGATGCATGTTGGACCCGAGCTCCGTCATTAAACTACCTCATTTAAT
TACATCAGGGCGGTCTATTCATGATTCTTTGGGTGCACACCGAATTGGGA
ATTGAGTGGGGGGTTCCCACTAGGTTCTATCAATAGCAGTTCAGGAGGGA
AAACTATAATAACATATTGTATTAAAAAGTATTTTCAATGAAAAAGAAAA
AATAAAGAATGACTTTCACAGATAAATTGGGTGAGTTTGGGGAAGGACTT
TCATTACAGAATAAAGTTTGAAAGCAATCAACCAGTCAGGATCCCGTAAA
TTATTGGGGTCCAATGAAGGGCTGTCAGTGAGTCTTTTTGTCTGGGGATT
AATAAGGCACAGTCACAGTCACTCTAGGTCAGTTAAGCTGGCTGAACTAC
CTACACCCACAAGGTACTCACATATGTCTCCATCCCAGTTTAAATTGAAT
CTTCAAAAGCCAAGAAAATACCAGATCCAGCCTGGCTTTGAGTTAGCTGT
GTTCACTGGGCTGCTTTGTAAATGGAGAATCAGCAATAGTGGCTGGTGTG
AGGTCCCAACCGTCCACTGTCTGAAGACTTGGCTTTTCCTGTTCTCCTTA
CTTCTGTTCCTGAGATAATCATATCTAAACTCCTGAAAGCCACAGGTTGA
ATTCCCTATATAGTATTATATATGTTATGACTTACTGCTCCAAAAGATAA
GACTTTCTGTCCCTGTCTATACAGAAGCTATAGCAAGGGAGAAAAAAATA
ACTGTAGATTATCAGAAGCCCAGTGCTGAATGAAGCCTTTACCAAAATAT
CCCTGTTAATTCCCTTTGATTAACAATCTAACATCATTTTTTCAATTGAA
AAATTTGGGGTGTTTAACAGGAATTACCATAGGCTTAAAAATTGAAATTT
ACCCCCCTAGTAAAGGAATCTCAAAAAGCTTCCCCCCTTCCACCTTTGAA
AAGAATATTGTTTTTTCTCGGAAGGATTCCGGCTGCCTTTCCGAAATCAG
GGGCCCCTACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no111_k18.g1 MSMg01no111_k18.g1 CHROMAT_FILE:
MSMg01no111_k18.g1 PHD_FILE: MSMg01no111_k18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:17 2005
         (769 letters)



>mm_chr1_28144463_28145625
          Length = 1163

 Score = 1180 bits (610), Expect = 0.0
 Identities = 719/760 (94%), Gaps = 12/760 (1%)
 Strand = Plus / Minus

                                                                        
Query: 11   ctaagccccttaccccataaaaacccctagctttcgagccttgtggacgacatccattat 70
            ||||||||||||||||||||||||| |||||||| ||||||||||| ||| |||  ||||
Sbjct: 1163 ctaagccccttaccccataaaaaccactagcttttgagccttgtggccgatatctgttat 1104

                                                                        
Query: 71   ctcctgtgtgggatgcatgttggacccgagctccgtcattaaactacct-catttaatta 129
            || ||||||||||||||||  || || ||||||| |||||||||||||| || |||||||
Sbjct: 1103 ctactgtgtgggatgcatgacggtccggagctccttcattaaactacctcca-ttaatta 1045

                                                                        
Query: 130  catcagggcggtctattcatgattctttgggtgcaca--ccgaattgggaattgagtggg 187
             |||||||||||||||||||||||||||||||  |||  |||||| ||||||||||||||
Sbjct: 1044 aatcagggcggtctattcatgattctttgggt--acatgccgaatcgggaattgagtggg 987

                                                                        
Query: 188  gggttcccactaggttctatcaatagcagttcaggagggaaaactataataacatattgt 247
            || ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 986  ggtttcccactaggttctatcaatggcagttcaggagggaaaactgtaataacatattgt 927

                                                                        
Query: 248  attaaaaagtattttcaatgaaaaagaaaaaataaagaatgactttcacagataaattgg 307
            |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 926  attaaaaagtattttcaaggaaaaagaaaaaataaaggatgactttcacagataaatggg 867

                                                                        
Query: 308  gtgagtttggggaaggactttcattacagaataaagtttgaaagcaatcaaccagtcagg 367
            ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct: 866  gtgagtttggggaaggactttcattacagaacaaagtttgaaagcaatcaaccagtaagg 807

                                                                        
Query: 368  atcccgtaaattattggggtccaatgaagggctgtcagtgagtctttttgtctggggatt 427
            |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 806  atcctgtaaattattggggttcaatgaagggctgtcagtgagtctttttgtctggggatt 747

                                                                        
Query: 428  aataaggcacagtcacagtcactctaggtcagttaagctggctgaactacctacacccac 487
            |||||||      |||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 746  aataagg------cacagtcactctagttcagttaagctggttgaactacctacacccac 693

                                                                        
Query: 488  aaggtactcacatatgtctccatcccagtttaaattgaatcttcaaaagccaagaaaata 547
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692  aaggtactcacatatgtctccatcccagtttaaattgaatcttcaaaagccaagaaaata 633

                                                                        
Query: 548  ccagatccagcctggctttgagttagctgtgttcactgggctgctttgtaaatggagaat 607
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 632  ccagatccagcctggctttgagttagctgtgttcactgggctgctttgtaagtggagaat 573

                                                                        
Query: 608  cagcaatagtggctggtgtgaggtcccaaccgtccactgtctgaagacttggcttttcct 667
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 572  cagcaatagtggctggtgtgaggtcccaaccgtccactgtctgaagccttggcttttcct 513

                                                                        
Query: 668  gttctccttacttctgttcctgagataatcatatctaaactcctgaaagccacaggttga 727
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512  gttctccttacttctgttcctgagataatcatatctaaactcctgaaagccacaggttga 453

                                                    
Query: 728  attccctatatagtattatatatgttatgacttactgctc 767
            | ||||||||||||||||||||||||||||||||||||||
Sbjct: 452  actccctatatagtattatatatgttatgacttactgctc 413


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 769
Length of database: 1163
Length adjustment: 10
Effective length of query: 759
Effective length of database: 1153
Effective search space:   875127
Effective search space used:   875127
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


| Home | SequenceCutter | Blast | Download |