Query= MSMg01no111_o04.b1 MSMg01no111_o04.b1 CHROMAT_FILE:
MSMg01no111_o04.b1 PHD_FILE: MSMg01no111_o04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:46 2005
(744 letters)
>mm_chr1_128287174_128288317
Length = 1144
Score = 1365 bits (706), Expect = 0.0
Identities = 735/746 (98%), Gaps = 4/746 (0%)
Strand = Plus / Plus
Query: 1 tccaaatcactgcatggttaagacgaggacgacacttagtcttatgcttggt--gacgac 58
||||||||||||| |||||||||||||||||| ||||||||||||||||||| || ||
Sbjct: 201 tccaaatcactgcgtggttaagacgaggacgagacttagtcttatgcttggtaaga--ac 258
Query: 59 ttacccatcatattagcaaagcgctgagtggtccaaaactgcagtaagtgcttattaagg 118
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ctacccatcatagtagcaaagcgctgagtggtccaaaactgcagtaagtgcttattaagg 318
Query: 119 gtgactgtcagtgaccacttttagtcttaatcctgatgctgacaataatatacagatatc 178
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 319 gtgactgtcagtgaccacttttagtcttaatcctgatgctaacaataatatacagatatc 378
Query: 179 ttgatcttaaaaacctcatacagtttcccctgctggttttgtcccatgtccataactttc 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ttgatcttaaaaacctcatacagtttcccctgctggttttgtcccatgtccataactttc 438
Query: 239 tcctgtggcatgtagaacgcaaatccaagttgctgtttgtctcacctgcttagccccttt 298
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 439 tcctgtggcatgtagaacgcaaatccaagttgctgtttgtctcacctgctcagccccttt 498
Query: 299 catgcattaattattaagtcataaatttaatttctgctagggcttgccttccagagcatt 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 catgcattaattattaagtcataaatttaatttctgctagggcttgccttccagagcatt 558
Query: 359 tgcaattgcatttattaagattgtaccttttccactcattcacttcagcccccttcgttt 418
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 559 tgcaattgcatttattaagattgtaccttttccactcattcagttcagcccccttcgttt 618
Query: 419 tgtagatcagtgagagaggaaagaatcctatttagactaggaatctttatattgctgtct 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tgtagatcagtgagagaggaaagaatcctatttagactaggaatctttatattgctgtct 678
Query: 479 ttcctcagtgaatgggtgtaattatgtgtatgggaaattagagtgtttgctatggtaatt 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ttcctcagtgaatgggtgtaattatgtgtatgggaaattagagtgtttgctatggtaatt 738
Query: 539 attcactcttctaaaataagagaataattataatgtcaacatctgactgtacaagttact 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 attcactcttctaaaataagagaataattataatgtcaacatctgactgtacaagttact 798
Query: 599 gctgaagcatttaagtctgccacaaagtggctcgcaggatcctggcaattaatattaatt 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 gctgaagcatttaagtctgccacaaagtggctcgcaggatcctggcaattaatattaatt 858
Query: 659 ttccacaaatgctttctattcatctggagaacattccagatggccttcacacttcccatt 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 ttccacaaatgctttctattcatctggagaacattccagatggccttcacacttcccatt 918
Query: 719 gcctggcagagactcttctttacata 744
||||||||||||||||||||||||||
Sbjct: 919 gcctggcagagactcttctttacata 944
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 744
Length of database: 1144
Length adjustment: 10
Effective length of query: 734
Effective length of database: 1134
Effective search space: 832356
Effective search space used: 832356
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no111_o04.g1 MSMg01no111_o04.g1 CHROMAT_FILE:
MSMg01no111_o04.g1 PHD_FILE: MSMg01no111_o04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:46 2005
(747 letters)
>mm_chr1_128383282_128384428
Length = 1147
Score = 1042 bits (539), Expect = 0.0
Identities = 563/571 (98%)
Strand = Plus / Minus
Query: 177 ctgagtgtggggctgattagagagaaacagaaatcagtccagagggatgatgggagttaa 236
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 1147 ctgagtgtggggctgattagagagaaacagaaatcagtccagagagatgatgggaggtaa 1088
Query: 237 gtaatggagggcgtacctcctagggaagaagaaggagacataccctccagggtcacttgc 296
||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 1087 gtaatggagggtgtacctcctagggaagaagaaggagacattcactccagggtcacttgc 1028
Query: 297 acgtaaggagaggggacagagtcattacatcagcaaaaggcttcagttcgggagcttgga 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1027 acgtaaggagaggggacagagtcattacatcagcaaaaggcttcagttcgggagcttgga 968
Query: 357 agatgcctcagtggttggtgtgcttgccacacaaggagttcagattcccagattccatgt 416
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 967 agatgcctcagtggttggtgtgcttgccatacaaggagttcagattcccagattccatgt 908
Query: 417 aaaagatgccagggggtgtgacagccttggaaggaaggtgaagatcaggggtccttagag 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 907 aaaagatgccagggggtgtgacagccttggaaggaaggtgaagatcaggggtccttagag 848
Query: 477 cgacctggatagaaagcatagttgcatcagagaactctgggtttgattgagagatcctgc 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 cgacctggatagaaagcatagttgcatcagagaactctgggtttgattgagagatcctgc 788
Query: 537 ctcagtaaatacagtggaagagtgattgatgctgatttctgacatcaagcctgaatctcc 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 ctcagtaaatacagtggaagagtgattgatgctgatttctgacatcaagcctgaatctcc 728
Query: 597 agctacatatatattccatttcatatgcccacacaaatgaaagcatgcatacactcgtga 656
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 727 agctacatatatattccatttcatatgcccacacaaatgaaagcatgcatacacacgtga 668
Query: 657 aagtgggaaaagaacaagagatgaaggaagaagaggaagaagaggaggaagaagaacaca 716
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 667 aagtgggaaaagaacaagagatgaaggaaaaagaggaagaagaggaggaagaagaacaca 608
Query: 717 tgtcaaagacttactgtactctgtggctcct 747
|||||||||||||||||||||||||||||||
Sbjct: 607 tgtcaaagacttactgtactctgtggctcct 577
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 747
Length of database: 1147
Length adjustment: 10
Effective length of query: 737
Effective length of database: 1137
Effective search space: 837969
Effective search space used: 837969
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
