BAC Information

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BAC

Clone NameMSMg01-111P18
Chromosome1 (Build37)
Map Location 194,048,872 - 194,198,384
singlet/doubletdoublet
Overlap geneKcnh1
Upstream geneNenf, 2310028N02Rik, Ppp2r5a, LOC100039501, LOC667044, Dtl, Ints7, Lpgat1, Nek2, 4930557M11Rik, Slc30a1, 3322402L07Rik, LOC100042611, Traf5, Traf5, LOC100042625, Rcor3
Downstream geneHhat, A730013G03Rik, Sertad4, LOC100039677, Syt14, AA408296, Irf6, A130010J15Rik, Traf3ip3, Hsd11b1, G0s2, Lamb3, Camk1g
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-111P18.T7 (MSMg01no111_p18.b1)MSMg01-111P18.TJ (MSMg01no111_p18.g1)
ACCAG324516AG324517
length1,1281,115
length of high quality
(start - end)
605 (112 - 716)327 (117 - 443)
definitionCHROMAT_FILE: MSMg01no111_p18.b1 PHD_FILE: MSMg01no111_p18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:16:59 2005CHROMAT_FILE: MSMg01no111_p18.g1 PHD_FILE: MSMg01no111_p18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:16:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(194,048,872 - 194,049,476)(194,198,063 - 194,198,384)
sequence
CTATGCGCGCTATAGACTACTATAGGGAGAGGATCCGCGGAATTCCTTCG
AAATTCTGACGTTTAAAACACCAGTGAGTATCCGAGGCTCAGAGCCCAGC
TTTATGTGTGTAGAGGGTGAGGTATTACTTCCACTTCTGTGACTGTTTGG
TTTTGATTCTTTCCCCTCATCTAGTTACTAGAAGCCATTGTGTGTCACTA
ACCAATTAAGACTTCATCTATTTTTCTCTCAAGAGTTAGTCTTGTCCCTC
TTGGTTCATTTATGAATTGCTCCTGGGAGGCACCAGGGGAGAGGCAGGAG
AAGCCCTGTCCTGTCTGTCTTAGGTTCTACTTCCCATAACTTCTAACTCA
GTGAGAGACTCTTCCAGGTGCCCAGCTAAGAGTCTGTGAGTAACGGTCTC
ATGATGACCCAAGGAGACAGTATTAACTGCATGGCATTACATATTTTTGC
ATTGGTCTTGGCCACAGTTACTTCTACCAAGTATACAATAAAGTTTGTAG
CCATGCCCAAGTATAGACCTTGTCTTCCTCTTAGGTGGCTTCTTGATGAA
CAGAGGTGAGCTGTCCTAAGAAGTGAGGAAGTAGAGTGATGTCAACCTCT
GGTCTGTCTCCACACCCATGTACACCTGCACTCACACATGCACATGATGC
AAACATGTGTTCACACATGCATATCACACACACAGCCAATGAAGAATCCT
GCTTTTTATAATAGTAGAATTGATCGACAGGTTGTTGGTTCAACTAACAT
GTCTGGAGTGGCCCAGATGGCGCATGAGGGTGTGTGTCTATTGGGTGGTG
TTCCGGGCTCAGTGATTGACAGCTTGCTTGGGAAAGCACATGCTGCGTTC
ATCTCAAGAAGTTGGAATGCTTCTCCTGTCTGTTTGGAATGCCTGAGGGA
TCTTGCCCTGGTGGTTATATTAGGCGTTGACTCCTAGAGCTGCACTTCTG
GCCAAAATAAAGTTCCACGGCCCCCCTTTCCTGTAACTTTGGTTGTTGAA
AACAAGGGTGCCCACACTCCGGCCTTTATCCTAAGGCTTTTCCTATTCCT
CCCCCCTTTCTTATTCCTTTATGGAAGTAATCTAAATCTTCTAAGCTTTT
TTCTAAGAAAGGTCTCTTTTTTCTGCTC
NAACCCTAGGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCCTTTAAAAACTTAGGATCCAGCACTTAGGAGGAAGAG
CACCCTTTAAAGGCTATGTGTGAGGCTGTCTTTAAGACAAACGGATTTCA
AAGGTAGGAGCAGCCAGGTGTCTCTGCAGGAAAAGACACTTGATGTCAAA
CCTGGTGACATGCATTTGACTCCTGGGGCAAGTTGTCCTCTGGCCTCACA
GGGCACCGCCATATGTGTGCTCTCCTCACCCACAAAACAAACAGATGTAG
AACACTTTCTTTTTGTTTATAAGAAGGTGGAACCAGGTGGAGTTAGGGGC
ACAAAATAGGACGTGAAAAGGATCGGATTATATAGCATGATTTTCTCAGA
GAACTAATAAAAATACTATATTAAAAAAGTACAAGTGTGGTTTTTATAGT
GCACCCCATCCCCCACAAACTTGTTAATTAACCAGAGTTCACTGATCCTC
AACTTCTTATGATACACACGATAAAAATCAATACTTTCTAGAAGATTAAA
GTTTTAAATAAAATTCAAATGTTTCACCTGACAAAATGTGTATGGAAAAT
TTATGGAGAAAATTATCAAGCCTTCATCATAGGAATTTAAAATTTTTGGA
ATAAATTGTTAAGCCTAATCCCCCCATTATTAAGACATTAATTTTTCCTG
ATTTACTACTGCATTCAAATGGATTCCAAGAAAATTCCCCCGAGGCTCTA
GGGCACTTAGACTAATTTTAAAATTCAACACATGGATAACAGTATATGAA
CTATTGGCAGGAGAGCCTGACTTACCAGTTAGAGTCTATTAACCACATAC
AGTAACAAGAGCAGAGTTGGGGACCCAAAGAACCAGTGGTGGAAGAGTTG
GTGGAAAAGGAGCTCAAGTTAAAGTGCTCTGGAAATGGCTATTGGATATT
TTAAAGGTACCCACCCAAAAAAAAAACTGGTACTCCTTTGTTTGTCTCCT
CCTTAACCCCCACCCGACCAATTCTTGACTCCCCCACGGGGGGCTTGGTG
GCCCCCCTCTTTGGGTTTCCGGCTTGTTTTAAACCAAAAAATACGCTCTT
TTTTGCCCCCCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no111_p18.b1 MSMg01no111_p18.b1 CHROMAT_FILE:
MSMg01no111_p18.b1 PHD_FILE: MSMg01no111_p18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:59 2005
         (605 letters)



>mm_chr1_194048672_194049676
          Length = 1005

 Score = 1123 bits (581), Expect = 0.0
 Identities = 599/605 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagggtgaggtattacttccacttctgtgactgtttggttttgattctttcccctcatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagggtgaggtattacttccacttctgtgactgtttggttttgattctttcccctcatc 260

                                                                       
Query: 61  tagttactagaagccattgtgtgtcactaaccaattaagacttcatctatttttctctca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagttactagaagccattgtgtgtcactaaccaattaagacttcatctatttttctctca 320

                                                                       
Query: 121 agagttagtcttgtccctcttggttcatttatgaattgctcctgggaggcaccaggggag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagttagtcttgtccctcttggttcatttatgaattgctcctgggaggcaccaggggag 380

                                                                       
Query: 181 aggcaggagaagccctgtcctgtctgtcttaggttctacttcccataacttctaactcag 240
           ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 381 aggcaggagaagccctgtcctgtctgtcttaggttctacctcccataacttctagctcag 440

                                                                       
Query: 241 tgagagactcttccaggtgcccagctaagagtctgtgagtaacggtctcatgatgaccca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgagagactcttccaggtgcccagctaagagtctgtgagtaacggtctcatgatgaccca 500

                                                                       
Query: 301 aggagacagtattaactgcatggcattacatatttttgcattggtcttggccacagttac 360
           ||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||
Sbjct: 501 aggagacagtattaactgcgtggcattatatattttcgcattggtcttggccacagttac 560

                                                                       
Query: 361 ttctaccaagtatacaataaagtttgtagccatgcccaagtatagaccttgtcttcctct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttctaccaagtatacaataaagtttgtagccatgcccaagtatagaccttgtcttcctct 620

                                                                       
Query: 421 taggtggcttcttgatgaacagaggtgagctgtcctaagaagtgaggaagtagagtgatg 480
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taggtggcttcttgctgaacagaggtgagctgtcctaagaagtgaggaagtagagtgatg 680

                                                                       
Query: 481 tcaacctctggtctgtctccacacccatgtacacctgcactcacacatgcacatgatgca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcaacctctggtctgtctccacacccatgtacacctgcactcacacatgcacatgatgca 740

                                                                       
Query: 541 aacatgtgttcacacatgcatatcacacacacagccaatgaagaatcctgctttttataa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aacatgtgttcacacatgcatatcacacacacagccaatgaagaatcctgctttttataa 800

                
Query: 601 tagta 605
           |||||
Sbjct: 801 tagta 805


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space:   592025
Effective search space used:   592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no111_p18.g1 MSMg01no111_p18.g1 CHROMAT_FILE:
MSMg01no111_p18.g1 PHD_FILE: MSMg01no111_p18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:59 2005
         (327 letters)



>mm_chr1_194197863_194198589
          Length = 727

 Score =  576 bits (298), Expect = e-169
 Identities = 316/322 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtgtgaggctgtctttaagacaaacggatttcaaaggtaggagcagccaggtgtctctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgtgtgaggctgtctttaagacaaacggatttcaaaggtaggagcagccaggtgtctctg 463

                                                                       
Query: 61  caggaaaagacacttgatgtcaaacctggtgacatgcatttgactcctggggcaagttgt 120
           ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 462 caggacaagacacttgatgtcaaacctggtgacatgcatttgacttctggggcaagttgt 403

                                                                       
Query: 121 cctctggcctcacagggcaccgccatatgtgtgctctcctcacccacaaaacaaacagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 cctctggcctcacagggcaccgccatatgtgtgctctcctcacccacaaaacaaacagat 343

                                                                       
Query: 181 gtagaacactttctttttgtttataagaaggtggaaccaggtggagttaggggcacaaaa 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 gtagaacactttctttttgattataagaaggtggaaccaggtggagttaggggcacaaaa 283

                                                                       
Query: 241 taggacgtgaaaaggatcggattatatagcatgattttctcagagaactaataaaaatac 300
           ||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||
Sbjct: 282 taggacgtgaaaaggatcggattatatcgcatgaagttctcagagaactaataaaaatac 223

                                 
Query: 301 tatattaaaaaagtacaagtgt 322
           ||||||||||||||||||||||
Sbjct: 222 tatattaaaaaagtacaagtgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space:   228324
Effective search space used:   228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)