Query= MSMg01no112_m09.b1 MSMg01no112_m09.b1 CHROMAT_FILE:
MSMg01no112_m09.b1 PHD_FILE: MSMg01no112_m09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:02 2005
(275 letters)
>mm_chr1_71818963_71819638
Length = 676
Score = 422 bits (218), Expect = e-122
Identities = 257/270 (95%), Gaps = 2/270 (0%)
Strand = Plus / Minus
Query: 7 ggaattctcctctgttcc-cagacaaaaactcttaagagcctttcactggccctgccatc 65
|||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 373 ggaattctcctctggtccacagccaaaaactcttaagagcctttcactggccctgccatc 314
Query: 66 ttaagagctggaattcccaggggcagagacctcctgacccctcaactccccaggtctgtt 125
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ttaagagctggaatttgtaggggcagagacctcctgacccctcaactccccaggtctgtt 254
Query: 126 tgttcaccaggtggctggattgtatccctggctttgcttatgtcatttgtcttagttagg 185
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 253 tggtcaccaggtggctggattgtatccctggttttgcttatgtcatttgtcttagttagg 194
Query: 186 gttttactgctgtgaacagacaccatgaccaatgtaagtcttactataatacagtatttc 245
|||||||||||||||||||||||||||||||||| |||||||| || || ||||||||||
Sbjct: 193 gttttactgctgtgaacagacaccatgaccaatgcaagtctta-tagaagacagtatttc 135
Query: 246 actggggctggcttacaggctcagaggttc 275
||||||||||||||||||| ||||||||||
Sbjct: 134 actggggctggcttacaggttcagaggttc 105
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 676
Length adjustment: 9
Effective length of query: 266
Effective length of database: 667
Effective search space: 177422
Effective search space used: 177422
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no112_m09.g1 MSMg01no112_m09.g1 CHROMAT_FILE:
MSMg01no112_m09.g1 PHD_FILE: MSMg01no112_m09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:02 2005
(262 letters)
>mm_chr1_71648553_71649214
Length = 662
Score = 489 bits (253), Expect = e-143
Identities = 259/261 (99%)
Strand = Plus / Plus
Query: 1 tattgtacacatttgtgacaaccctatttgatggtagaagcaaagaacactaggtttatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tattgtacacatttgtgacaaccctatttgatggtagaagcaaagaacactaggtttatt 260
Query: 61 atgagattgcacctatgaactctatgaaatgacctcctgccttactctgcagagggaagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgagattgcacctatgaactctatgaaatgacctcctgccttactctgcagagggaagc 320
Query: 121 tcacttcttaccatgagtcctgacacaatcaccgatgagctgtctggagaaaggttgatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcacttcttaccatgagtcctgacacaatcaccgatgagctgtctggagaaaggttgatt 380
Query: 181 tctttcatcggtcctgtcttctctttcgggttcacccgcacccggtagccagtgagctga 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctttcattggtcctgtcttctctttcgggttcacccgcacccggtagccagtgagctga 440
Query: 241 acactggttgctatccactgg 261
||||||| |||||||||||||
Sbjct: 441 acactgggtgctatccactgg 461
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 262
Length of database: 662
Length adjustment: 9
Effective length of query: 253
Effective length of database: 653
Effective search space: 165209
Effective search space used: 165209
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
