Query= MSMg01no113_b05.b1 MSMg01no113_b05.b1 CHROMAT_FILE:
MSMg01no113_b05.b1 PHD_FILE: MSMg01no113_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:24 2005
(656 letters)
>mm_chr1_59754753_59755806
Length = 1054
Score = 1189 bits (615), Expect = 0.0
Identities = 643/653 (98%), Gaps = 3/653 (0%)
Strand = Plus / Plus
Query: 5 gaattctttttggttcctc-agacggggtttgactaggctggactcaaactcagaaatcc 63
||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||
Sbjct: 204 gaattctttttggtttttcaagacggggtttgaccaggctggactcaaactcagaaatcc 263
Query: 64 gcctgcctctgcctcccaagtgctgggatcaaaggtgtgtgccacctctgcctggctaca 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gcctgcctctgcctcccaagtgctgggatcaaaggtgtgtgccacctctgcctggctaca 323
Query: 124 ttggtgaattcttaaaagacaatatctgaaaacccacaacggtgaattttcaagaaaact 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttggtgaattcttaaaagacaatatctgaaaacccacaacggtgaattttcaagaaaact 383
Query: 184 tatttttcatttaatgtgaatgtttttataggaaaaattgaatctcagctgtatccatag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tatttttcatttaatgtgaatgtttttataggaaaaattgaatctcagctgtatccatag 443
Query: 244 tcctgttgttaatgaacttatgagaggaatccgatcacaaatggatggcttgattcctgg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tcctgttgttaatgaacttatgagaggaatccgatcacaaatggatggcttgattcctgg 503
Query: 304 ggtagaaccacgtgagatggcagccatgtgtcttggattggcccacaggtaagtacagaa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ggtagaaccacgtgagatggcagccatgtgtcttggattggcccacaggtaagtacagaa 563
Query: 364 aagttaaatgtatgcttactcatatacatacacatatttatatacatctgtcctaaaagt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 --gttaaatgtatgcttactcatatacatacacatatttatatacatctgtcctaaaagt 621
Query: 424 gtgtaagtattaatgtcagggagatgctgctgttgccttcaagaaaaaacttgctcagca 483
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 622 gtgtaagtattaatgtcagggagatgctgctgttgccctcaagaaaaaacttgctcagca 681
Query: 484 tcaataaagctgataagtggtaaaaatacgattattagacccagtgtattctttttggtt 543
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 682 tcaataaagctgataagtggtaaaaatacaattattagacccagtgtattctttttggtt 741
Query: 544 tttccaggcaggatttgtctgtatagctctggctgtcctggaactcggtctgtagaccag 603
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 742 tttccaggcaggatttgtctgtatagctctggctgtcctggaactcggtctatagaccag 801
Query: 604 gctggtcttgaattcaaagatccaactgcctctgctaccgaggtgctgggatt 656
|||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 802 gctggtcttgaattcaaagatccaactgcctctgcttccgaggtgctgggatt 854
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1054
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1044
Effective search space: 674424
Effective search space used: 674424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no113_b05.g1 MSMg01no113_b05.g1 CHROMAT_FILE:
MSMg01no113_b05.g1 PHD_FILE: MSMg01no113_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:24 2005
(617 letters)
>mm_chr1_59887030_59888043
Length = 1014
Score = 1085 bits (561), Expect = 0.0
Identities = 598/615 (97%), Gaps = 10/615 (1%)
Strand = Plus / Minus
Query: 10 ctaccacgagacatccattgaaggactactcagaccagagactgtaaagtctaataaatc 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1014 ctaccacgagacatccattgaaggactactcagaccagagactgtaaagtctaataaatc 955
Query: 70 cccagactaatataacaaaggaccaattctcagaaataaaactcttgagtttgggattta 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 954 cccagactaatataacaaaggaccaattctcagaaataaaactcttgagtttgggattta 895
Query: 130 ctctctgggtttttcttttcactgtgtggaataaagaaagaataatgttcaatatattac 189
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 894 ctctctgggtttttcttttcactgtgtggaataaagaaagaataatgttcaatgtattac 835
Query: 190 aacactttcaaag-------aatcattaagcacattaatgaattagaaccatcacagaat 242
||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct: 834 aacactttcaaagaactgttaatcatgaagcacattaatgaattagaaccatcacagaat 775
Query: 243 gaataataataatcttactctaggaaatatctgtgttgagctgaattatttgtccccaga 302
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 774 gaataataataatcatactctaggaaatatctgtgttgagctaaattatttgtccccaga 715
Query: 303 atttataatcacatggactgtgttcctgtgacattattaaataattttaatacttaaaag 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 714 atttataatcacatggactgtgttcctgtgacattattaaataattttaatacttgaaag 655
Query: 363 tcattccagtatcatgtcctgtgtcaaacagctaatcatttcccatttagtaccatgaaa 422
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 654 tcattccagtatcatgtcctgtgtcaaacagctaatcatttcccatttattaccatgaaa 595
Query: 423 taatttttaatgaataacaaaacttattttagaaaatataactgttttaatgtcttgggt 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 taatttttaatgaataacaaaacttattttagaaaatataactgttttaatgtcttgggt 535
Query: 483 gcttagactttcaaatatttaggcagctgaattagctcaagctaatgtaatatatattag 542
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 534 gcttagactttcaaatatttaggcagctgaattagctcaagctaatgta--atatattag 477
Query: 543 gtagaataattacgagggctgatttatttccttacaagttacattaaacaaaaattcttg 602
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 476 gtagaataattaagagggctgatttatttccttacaagttaca-taaacaaaaattcttg 418
Query: 603 agaaaattttctcaa 617
|||||||||||||||
Sbjct: 417 agaaaattttctcaa 403
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1014
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1004
Effective search space: 609428
Effective search space used: 609428
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
