Query= MSMg01no113_h01.b1 MSMg01no113_h01.b1 CHROMAT_FILE:
MSMg01no113_h01.b1 PHD_FILE: MSMg01no113_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:52 2005
(611 letters)
>mm_chr1_147640235_147641244
Length = 1010
Score = 1025 bits (530), Expect = 0.0
Identities = 548/556 (98%), Gaps = 5/556 (0%)
Strand = Plus / Plus
Query: 1 catcctctaccttctccttccccccttctccttccctgctttagttgagtttcttttttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catcctctaccttctccttccccccttctccttccctgctttagttgagtttcttttttc 260
Query: 61 cttatatttccatgggtggaaaattttattacaatgtggcaaagttgcaaagcagtgaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttatatttccatgggtggaaaattttattacaatgtggcaaagttgcaaagcagtgaga 320
Query: 121 cagcaatggaaatccagggatcttagtctatggtcactaaagctaagtcactattttaaa 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 cagcaatggaaatccagggatcttagtctatggtcactagagctaagtcactattttaaa 380
Query: 181 aagattaaagcagtgcttgtcggaagctaactcgattctcataaaaactgctattgtaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagattaaagcagtgcttgtcggaagctaactcgattctcataaaaactgctattgtaag 440
Query: 241 agtgtg--tttttcccacctggatcttgcccagttctccttctttcttccatattaccca 298
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtgtgcctt---cccacctggatcttgcccagttctccttctttcttccatattaccca 497
Query: 299 ttaagaccattaccacagtcaagacatgactggcactataagcgtaatcctccatatctg 358
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ttaagaccattaccacagttaagacatgactggcactataagcgtaatcctccatatctg 557
Query: 359 taagctaaatgatcttccccctctagtattgcatgttgcacattttattgtaaaaacaaa 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 taagctaaatgatcttccccctctagtattgcatgttgcacattttattgtaaaaacaaa 617
Query: 419 taaaagatatagtaacatggtagcccttacaaatattatctagtgaagctaatagttgta 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 taaaagatatagtaacatggtagcccttacaaatattatctagtgaagctaatagttgta 677
Query: 479 tttacttttgttggcttgttgtaaaatttttagacacattctttatacacatggaggaaa 538
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tttacttttgttggcttattgtaaaatttttagacacattctttatacacatggaggaaa 737
Query: 539 agaaatagctactctt 554
||||||||||||||||
Sbjct: 738 agaaatagctactctt 753
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1010
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1000
Effective search space: 601000
Effective search space used: 601000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no113_h01.g1 MSMg01no113_h01.g1 CHROMAT_FILE:
MSMg01no113_h01.g1 PHD_FILE: MSMg01no113_h01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:52 2005
(617 letters)
>mm_chr1_147799263_147800280
Length = 1018
Score = 652 bits (337), Expect = 0.0
Identities = 430/497 (86%), Gaps = 57/497 (11%)
Strand = Plus / Minus
Query: 1 aattgaaccttatacctttatgacaaagaagaaataccttcaaatgttgtatatcttaat 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 497 aattgaaccttatacctttatgacaaagaagaaataccttcaaaagttgtatatcttaat 438
Query: 61 atgaagacgacatgaaccagagtgaatattcctattcaccttagatgtattaaatgccca 120
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 atgaagacgacacaaaccagagtgaatattcctattcaccttagatgtattaaatgccca 378
Query: 121 gtcttagtttatttcaatgagaagtattacttttacagtctttgtttcaagaacatagag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gtcttagtttatttcaatgagaagtattacttttacagtctttgtttcaagaacatagag 318
Query: 181 agcaacatcaac-tttttttaacatctactctgacttaaaagtgttttatttgatcatgg 239
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 317 agcaacatcaacttttttttaacatctattctgacttaaaagtgttttatttgatcatgg 258
Query: 240 tcaagcattttttgaatatgactattcaatgtaagaatgaggaataacagtgccaga--- 296
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tcaagcattttttgaatatgactattcaatgtaagaatgaggaataacagtgccagaaca 198
Query: 297 -------------------------------------acacacacacacacacacac--- 316
||||||||||||||||||||
Sbjct: 197 cacacacacatacacacacacacacacacacacacacacacacacacacacacacacata 138
Query: 317 -------------gtatatgtatatgtatacgtatacgtatacgtatacgtatatgtata 363
||||||||||||||||| ||||| ||||| ||||| |||||||||||
Sbjct: 137 tgtatatgtatatgtatatgtatatgtatatgtatatgtatatgtatatgtatatgtata 78
Query: 364 tgatgtatatgtattaatcttggtctacacatcatgaaaagttgcctacagaaaacagca 423
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct: 77 tgatgtatatgtattaatcttggtctatacatcatgaaaagttgcctatagaaaacagca 18
Query: 424 atcctgacattgccctg 440
|||||||||||||||||
Sbjct: 17 atcctgacattgccctg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1018
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1008
Effective search space: 611856
Effective search space used: 611856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
