BAC Information

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BAC

Clone NameMSMg01-113H15
Chromosome1 (Build37)
Map Location 52,274,661 - 52,275,245
singlet/doubletsinglet
Overlap geneGls
Upstream geneSdpr, LOC383504, Obfc2a, Myo1b, EG667010, LOC667014, Stat4, LOC100042634, Stat1
Downstream geneLOC546735, Nab1, LOC546736, Gm553, LOC100042094, EG433305, 5330401P04Rik, 2210010L05Rik, Inpp1, Hibch, 1700019D03Rik, Gdf8, 1700019A02Rik, Pms1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113H15.T7 (MSMg01no113_h15.b1)MSMg01-113H15.TJ (MSMg01no113_h15.g1)
ACCAG325603AG325604
length707712
length of high quality
(start - end)
589 (42 - 630)---
definitionCHROMAT_FILE: MSMg01no113_h15.b1 PHD_FILE: MSMg01no113_h15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:55 2005CHROMAT_FILE: MSMg01no113_h15.g1 PHD_FILE: MSMg01no113_h15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXCTATTTCAAGAGGATCCGCGGAA
TTCCATGTTTTACAATGCATTCCAGCAGCATGGAATGACATTGGTTATTT
TTGGCAACCCAATGAGGTAACTTCTTATACTTGAAATCAGAAGGAATCTC
TCTGGAGTCATTACCTGTCAAAGTGACCTGGAAAAGGTCCTAGTAAGAGG
TTCTGAGTTACCTCATTCTAGAAATGAAAAGGAATCACCCTTTGTCTATG
ACCTGCTACAAAGACTACTTTGTTTCCATGTTAAGTCAGAGACTGCCTAC
ATTGTAATCATAGTTTTTTAAAACTCAAGCTTGTGTCAAAGTTATGGTAA
TTACTGTAGATTAATTCAATTACAGTTTTATGATAATGGTTCCTTGAGTT
CATAATTGAGAGACAACATTTAAATTGCTTTTAATTTCATAATGAAACAA
TGTTCATAAAGCACATTTTAGAACAGGTTTAAATATGGAAATTAGTGATT
CCCTTAAAAATTATAAAGCTAGTTCTCTATACATATTATTTACAACCCAA
CCTACCATCAATTAACTATACTCACAGACCAACTAAAATAACTTCTCAGA
AGGCACCATAATCAAGAAAGAGTATGGACAAATAGGTCCTAAGCCAAATC
TTTACTACGAAGCAAGAATAATCTAGAGGCGAATTTATTCCCTTCACAAA
ATAACCC
ACTCCGTTAGTGCTGTACGGCGGCTGCTCTCCTACXXXXXXXXXXXXXXX
XXXXXXXXXXXXTAAGTCACGCTGTATACTTCCTTCTGACACTATGTCAT
CGCAAGAACTACTAGGGTTGTCTAACACGTGTGAAGGAAGGAATTTAAAA
AGGATATAGGGCTAAACAAGGACCGGAACGGACCCTGAAAGGATGCTATC
TCTCTCAGCGTCTGCGTTCGATGCTACTAGCCAGCCCACGAGCGTTTGTT
TCGTTTACATTTATTTTGAATATGAAACTGATAGCCACTACTTTTGAGAC
ATACTACATATATGGATATATTTTCTTGACACACTGGTGCTTTTATGAAT
ACGTACCATTCGTGTCTTACTAGGATATTTTAAGTCTACTTCGTGGACTA
TGCCAGATATAGCATCCTGCGTGACGCCGATATCCTTCTTTTGATACATT
GTTCCCCACTCGTTGACTTTCAATTTTCAGGATTTTCATGAGTGAAGTGC
ATTGTTGGATACAACTGCCAGTTTTTAACTCATACATCCAGCCTGAGAGG
ATTTACTGGCCCATTGCATCAGTATATGGCTGACCTTCTGAAGCAGAAAT
GTCTTACTGAGTGCATTGGACGCCGTGCTCTTGTCTTTCTCGCTGATAGC
ATCGTGTCTTCTGCATACTGTGCTGAACATGAAGATTCCTTCCTCACTCT
TCTGAATTCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_h15.b1 MSMg01no113_h15.b1 CHROMAT_FILE:
MSMg01no113_h15.b1 PHD_FILE: MSMg01no113_h15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:55 2005
         (589 letters)



>mm_chr1_52274456_52275445
          Length = 990

 Score = 1093 bits (565), Expect = 0.0
 Identities = 580/585 (99%), Gaps = 1/585 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   ggaattccatgttttacaatgc-attccagcagcatggaatgacattggttatttttggc 64
           |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 206 ggaattccatgttttaaaatgccattccagcagcatggaatgacattggttatttttggc 265

                                                                       
Query: 65  aacccaatgaggtaacttcttatacttgaaatcagaaggaatctctctggagtcattacc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aacccaatgaggtaacttcttatacttgaaatcagaaggaatctctctggagtcattacc 325

                                                                       
Query: 125 tgtcaaagtgacctggaaaaggtcctagtaagaggttctgagttacctcattctagaaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tgtcaaagtgacctggaaaaggtcctagtaagaggttctgagttacctcattctagaaat 385

                                                                       
Query: 185 gaaaaggaatcaccctttgtctatgacctgctacaaagactactttgtttccatgttaag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gaaaaggaatcaccctttgtctatgacctgctacaaagactactttgtttccatgttaag 445

                                                                       
Query: 245 tcagagactgcctacattgtaatcatagttttttaaaactcaagcttgtgtcaaagttat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tcagagactgcctacattgtaatcatagttttttaaaactcaagcttgtgtcaaagttat 505

                                                                       
Query: 305 ggtaattactgtagattaattcaattacagttttatgataatggttccttgagttcataa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ggtaattactgtagattaattcaattacagttttatgataatggttccttgagttcataa 565

                                                                       
Query: 365 ttgagagacaacatttaaattgcttttaatttcataatgaaacaatgttcataaagcaca 424
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ttgagagagaacatttaaattgcttttaatttcataatgaaacaatgttcataaagcaca 625

                                                                       
Query: 425 ttttagaacaggtttaaatatggaaattagtgattcccttaaaaattataaagctagttc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ttttagaacaggtttaaatatggaaattagtgattcccttaaaaattataaagctagttc 685

                                                                       
Query: 485 tctatacatattatttacaacccaacctaccatcaattaactatactcacagaccaacta 544
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 686 tctatacatattatttacaacccaacctaccatcaattaactatactcacagacaaacta 745

                                                        
Query: 545 aaataacttctcagaaggcaccataatcaagaaagagtatggaca 589
           |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 746 aaataacttcccagaaggcaccataatcaagaaagagtatggaca 790


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 990
Length adjustment: 10
Effective length of query: 579
Effective length of database: 980
Effective search space:   567420
Effective search space used:   567420
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)