BAC Information

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BAC

Clone NameMSMg01-113I15
Chromosome1 (Build37)
Map Location 34,877,746 - 34,878,057
singlet/doubletsinglet
Overlap geneBC043098
Upstream geneOTTMUSG00000022109, B230209C24Rik, Dst, LOC100040913, LOC383629, LOC100040938, Ccdc115, Imp4, Ptpn18, Tesp1, Cfc1, Tesp2, 9430069J07Rik, AA619741, Arhgef4
Downstream genePlekhb2, LOC666261, LOC100041544
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113I15.T7 (MSMg01no113_i15.b1)MSMg01-113I15.TJ (MSMg01no113_i15.g1)
ACCAG325651AG325652
length719712
length of high quality
(start - end)
401 (68 - 468)312 (69 - 380)
definitionCHROMAT_FILE: MSMg01no113_i15.b1 PHD_FILE: MSMg01no113_i15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:00 2005CHROMAT_FILE: MSMg01no113_i15.g1 PHD_FILE: MSMg01no113_i15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGCGCGGAA
TTCTCAACTGTTGCAACTCAAGTGGCTGCAATACACCTAAAGAAATGTTC
AACATTCATAGTCATCAGGGAAATAGAAATCAAAACAATCCTGAGATTCC
ACCTCACATCAGTCAGAATGGCTAAGATGAAAAACTCAGGTGACAGCAGA
TGCTGGCGCAGATGTGGAGAAAGAGGAACACTCCTCCATTGCTGATGGAA
TTGCAAGCTGGTACAACCACTCTGGAAATCAGTTTGGTGGTTCCTCAGAA
AATTGGACTACCTGAGGACCCAGCTATACCACTCCTGGGCATATACCCAG
AAGATTCTCCAACTTGCAATAAGAATACATGCTGGATCCACTGTGTTCAT
AGCAGCCTTATTTATAATAACCAGAAGCTGGAAAGAACCCAGATGTCCCT
CAACAGAGGAATAGATACAGAAAATGTGGGACATTTATACGATGGAATAC
TACTCAGCTATTACAAACAATGACTTTATGAAATTCTCAAGCAAATGGAT
GGAACTTGAAAATATCATCCTGAGTGAGATGACTCAGCCACAAAGCGACA
CAGTATGTACTCATTGATAAGGGGATATTCGCCCAAAAGTTAGGAATAAC
CAAGATTCATTTTCTCACACCATATGAGGCCTAAGCACGAAGACCAAAAG
CGGAATGCTTCAGAGCTTT
AACGCGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGACCACTGCAACTGCCAATTACCAGAGTCTG
GTGCCTCCAGTGGATTGGTATCTTGCTGATACACAAGACAAGCTCCAAGG
TAACTATGGAGTGAAAGGCAGACAAATACATGCTGCAAACAGCTGAGAGG
AAACCCTTGGAAGAATTCAATGACTGAAAACGAGGTAATGGCCATAGGCA
GGAGTGTCTTTCAGAAGTATGCAACCACAGACTATGGTGGCGGTGTACAA
CCATCCAAACACAGCACAACATTGCACTTGAACTCTGAGGACAGCTTGCA
GGCTTCCTCAGTCTTACTCTCTACATGTGCTCTCTGCGAAGGCCATGACG
GCCTTCATGCTTTTGTTGCTGCAAACATGGGGAACAGCACTCCGTTGCCC
ATGGTTGTGTCAGAATCCCTAGGCTCTGAAAGAACAGGCTTTCACAAATC
GCAGCCCAGCCACTTCCCCCCCCTTGGGGCCACAATTGGAATTCTGGAAA
AAATGGTTCTTCCGGCCTTAACCCTCATACTCCTTCCTCCCACACGATAA
CCTCGAATCTTTCCCCCCTACACCCCTACCCTGGTTATTTCTTTCCGAAA
CACTCTTTCCTTTTCTCCACCCCCCCTGGGAATTCCCCCCCGCTATGCCC
CAACCTTATAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_i15.g1 MSMg01no113_i15.g1 CHROMAT_FILE:
MSMg01no113_i15.g1 PHD_FILE: MSMg01no113_i15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:00 2005
         (312 letters)



>mm_chr1_34877546_34878257
          Length = 712

 Score =  588 bits (304), Expect = e-172
 Identities = 310/312 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaccactgcaactgccaattaccagagtctggtgcctccagtggattggtatcttgctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaccactgcaactgccaattaccagagtctggtgcctccagtggattggtatcttgctg 260

                                                                       
Query: 61  atacacaagacaagctccaaggtaactatggagtgaaaggcagacaaatacatgctgcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atacacaagacaagctccaaggtaactatggagtgaaaggcagacaaatacatgctgcaa 320

                                                                       
Query: 121 acagctgagaggaaacccttggaagaattcaatgactgaaaacgaggtaatggccatagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acagctgagaggaaacccttggaagaattcaatgactgaaaacgaggtaatggccatagg 380

                                                                       
Query: 181 caggagtgtctttcagaagtatgcaaccacagactatggtggcggtgtacaaccatccaa 240
           |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 caggagtgtctttcagaagtgtgcaaccacagactatggtggtggtgtacaaccatccaa 440

                                                                       
Query: 241 acacagcacaacattgcacttgaactctgaggacagcttgcaggcttcctcagtcttact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acacagcacaacattgcacttgaactctgaggacagcttgcaggcttcctcagtcttact 500

                       
Query: 301 ctctacatgtgc 312
           ||||||||||||
Sbjct: 501 ctctacatgtgc 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)