BAC Information

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BAC

Clone NameMSMg01-113K08
Chromosome1 (Build37)
Map Location 48,468,186 - 48,468,709
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666869, LOC546734
Downstream geneLOC674566, LOC100041936, LOC666903, LOC666909, 2900045O20Rik, LOC666924, C230029F24Rik, LOC627430
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113K08.T7 (MSMg01no113_k08.b1)MSMg01-113K08.TJ (MSMg01no113_k08.g1)
ACCAG325732AG325733
length710713
length of high quality
(start - end)
573 (41 - 613)473 (65 - 537)
definitionCHROMAT_FILE: MSMg01no113_k08.b1 PHD_FILE: MSMg01no113_k08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:08 2005CHROMAT_FILE: MSMg01no113_k08.g1 PHD_FILE: MSMg01no113_k08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGCGGAATTCA
AATCCTTTCCCTCTCTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGATT
GTTTGTTAAAATTACATGTCTTCAAAGCTATAGTTGCTGGGGATTTGATG
CTTTTGTCTGACTGGCACAGACATGGACACATTTCTCATTTTCAGAAATC
TGGAAATATCTTAATTCAGTATGATTGCTTCTCAGTGCCTTCTCTTCTTT
GCAATGTTTCTATAAAAACAATATTTTGTTGAAATTTTCTTTCAGTAGAG
GAAATTTTCCAGGTTTTAATGGTTATGTCACTATTGAGATGACGTCGTCA
ACCTGTGTCAAATGTCTAACAGCAGATTTTAACATGATTTTCCACTTTAT
AGCCTCAATTGTAAACCCATACATTTTATTGTACGTGGAAATAATTTTAA
AGAACCATTAGCCACCTGCCCATCATTTTAGAACAAGCAAGGCTCACTGA
ACCTACAATTAGCCAATTAAGCAGACAATTACAGCGTTTGTAGTTGTCAA
CAGAAAAACAGGATCCTTTATACAAAAAAAGTGCTAGCATTGTGTCACTG
ACTGCTTTACAGCCTAGACTTTAGCAGGCCTTGGTTATTATAGTAATGAC
TACAAAGTGAATCACTATTACTTCTGTCTTTATGGGGTTTAGCATGACTT
CTCATCCCTA
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTTCAGCTGATACAGGCAGTTTGATTTGACCAATGT
GCTGTTTGGAATTACAATGTCCGACATATGTTCAAATGCTTAGCCATTAT
GGAGTGGCATTTCTTAACAAGAATTAGGAGGTATGGCCTTGTTGGAATAG
GTACAGCACTGTTGAAGGAAGTGTGTCTCTGATGTGGGCTTTGGGGTTTC
AGAGGTCTTCTTCAGGACTAGTCTCACTTTTCTTCCTGTTTCTTGTGGAC
AGATTGGTATGTAGAACTGTTACCTCTTTCTCCTGCATGATTTCTTCCTG
TATGCTGCCATACTTCCCACCATGATAACAATGGACTAAACCACTACACT
AAGCTCCAATTAAATATTTTCCATTTAAAGAGTTGCTATGGTCATGGTCT
CTCTTGAGAGCAATAGAACACTGACCAAAACACCCAAGAACTAGATGTCT
TTGTCCAAGGTAGCTGACCGTAAGGGCAAACTAATACAGTGGCCCAGAAA
ACAGAAACCTTCTTTCCAAGATCTGCTTTNTGGTAAACAAACATATAACA
AACAAACCATACAAACAAACACACTGAGTTAGGCTTTTGTTTAGCTGACT
TAGAGTCCTTCAATTTAGGACATTATTATAAGAACTACCATTTTGGGGCG
TTACTTTCCGACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_k08.b1 MSMg01no113_k08.b1 CHROMAT_FILE:
MSMg01no113_k08.b1 PHD_FILE: MSMg01no113_k08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:08 2005
         (573 letters)



>mm_chr1_48467937_48468909
          Length = 973

 Score =  930 bits (481), Expect = 0.0
 Identities = 514/525 (97%), Gaps = 2/525 (0%)
 Strand = Plus / Plus

                                                                       
Query: 50  tttgtttgattgtttgttaaaattacatgtcttcaaag-ctatagttgctggggatttga 108
           |||||||| |||||||||||  |||||||||||||||| | |||||||||||||||||||
Sbjct: 250 tttgtttgtttgtttgttaaggttacatgtcttcaaagtc-atagttgctggggatttga 308

                                                                       
Query: 109 tgcttttgtctgactggcacagacatggacacatttctcattttcagaaatctggaaata 168
           ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 309 tgcttttgtctgactggcacagacatggacacatttctcatttccagaactctggaaata 368

                                                                       
Query: 169 tcttaattcagtatgattgcttctcagtgccttctcttctttgcaatgtttctataaaaa 228
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tctttattcagtatgattgcttctcagtgccttctcttctttgcaatgtttctataaaaa 428

                                                                       
Query: 229 caatattttgttgaaattttctttcagtagaggaaattttccaggttttaatggttatgt 288
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 caatattttgttgaaattttctttcagtagaggaaattttccaggttttaatggttatgt 488

                                                                       
Query: 289 cactattgagatgacgtcgtcaacctgtgtcaaatgtctaacagcagattttaacatgat 348
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 cactattgagatgacgtcgtcaacctgtgtcaaatgtctaacagcagattttaacatgat 548

                                                                       
Query: 349 tttccactttatagcctcaattgtaaacccatacattttattgtacgtggaaataatttt 408
           ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 549 tttccactttataacctcaattgtaaacccatgcattttattgtacgtggaaataatttt 608

                                                                       
Query: 409 aaagaaccattagccacctgcccatcattttagaacaagcaaggctcactgaacctacaa 468
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 aaagaaccattagccacctgcccatcattttagaacaagcaaggctcactgaacctacaa 668

                                                                       
Query: 469 ttagccaattaagcagacaattacagcgtttgtagttgtcaacagaaaaacaggatcctt 528
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 ttagccaattaagcagacaattacagcgtttgtagttgtcaacagaaaaacaggatcctt 728

                                                        
Query: 529 tatacaaaaaaagtgctagcattgtgtcactgactgctttacagc 573
           ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 729 tatacaaaagaagtgctagcattgtgtcactgactgctttacagc 773


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space:   542169
Effective search space used:   542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)