BAC Information

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BAC

Clone NameMSMg01-113K20
Chromosome1 (Build37)
Map Location 113,302,059 - 113,302,590
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041429, EG626652, Cdh19
Downstream geneEG666578, Dsel, LOC547247, EG626897, LOC666615
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113K20.T7 (MSMg01no113_k20.b1)MSMg01-113K20.TJ (MSMg01no113_k20.g1)
ACCAG325753AG325754
length711715
length of high quality
(start - end)
553 (66 - 618)533 (69 - 601)
definitionCHROMAT_FILE: MSMg01no113_k20.b1 PHD_FILE: MSMg01no113_k20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:11 2005CHROMAT_FILE: MSMg01no113_k20.g1 PHD_FILE: MSMg01no113_k20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGCGGAATTCTCT
ATGATGTCTGTTAGGCCACTTAATTCATAAGGTATATTAGTTTTGTTATT
TCTGTTTTGATTTTGTCTCAATGACCTCCCAGCTGGTGAGAGTAGAGTGT
TAAAGTCTCCTACTATTAATGCATTGATTTAGATGGAAGATTCAAGCTTT
AGCAATGTTTCTTATTGAAATGTGGTTTTCTTTCTGTTTGGAGCATAGAT
GCTCAGAATTGAGATATAATCTTGGTAGATGTTTCCTCTGATGTATATGA
ACTTTAAATCTTCCCCAAAGGAAGGAATTAAAGAAGATACAGGAGATGTA
AATATCTCCCATGCTCATGGAGAGGTAGTATTAACATAGTGAAAATGACC
ATCTTACCGAAAACAATCTGCAGATTCAGTACAATCTCCATCAAAATTCT
AAAACATTTTTATAGATATTGAAATAGTAATTTGTAAATTCATACACACA
AAACAAAATACCAAGGATAGCTAAAAGAACCTAAAACATTCCTTCAGAAG
GAATCATTATTCCTGATCTTAAGCTGTATGACAGCAATAGTGACAAAAAC
TAAAAACTACATGGTATTGGGACAGAAACAAACATACTGATCAATGGAAT
CAGGTTACAGTCCCCAAAATAAACCCATATACCTTTGGACACTTGATCTT
TGCTAAAGATG
GATGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACTGAGACAGGTGATAGGCTATTACAGTATTT
TCACTCCTACTTGAAGAACTTGATGTTTACTGTCTGAGCACACATATGAT
AGTGCATGATTGGAAGACATTCTTGGAAAGGCAGATTAGATTTTCCATAG
GACTAGTTAATCATAGAATATTCTTTTGGGTGGGGGGCTGAAATGAAATG
ACTGATATATGATGATTCTATTCTCTGTTTTCTAGTGAAGACTATGCCGA
GATATATGGGAAGATATGCGAATATTTGAATATTTTTTTAAAAAAATCAC
ACATTTATGACAAGTCTTAAGGATAGTACTATTTTCATCACACATATTGT
TAAGTACAACCAGAAGGACCTATGAGCTGGCTCATTGACTAAGGGCCCTT
GTTCCAAGTCTTCCAAACTGAGTTAGGATGTCAGAGCACACAAGTTTGAA
GAATAGATGCCATTCTTGGAAGTAACACACTGACAACCATACCTGAAATC
TTCCATACAAATATGTATACATAGTCACCGACATGTAACGAATATATGTG
TAAATAAACAAAACAATAACACTGTAAGAAATAAAACAAGTTTTCAAATT
ATTTGTTTTTTAGTCATGGGGAAAACTATTAGACTGTGGAAAGATATTTT
TTTACTGGCTTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_k20.g1 MSMg01no113_k20.g1 CHROMAT_FILE:
MSMg01no113_k20.g1 PHD_FILE: MSMg01no113_k20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:11 2005
         (533 letters)



>mm_chr1_113301859_113302790
          Length = 932

 Score =  932 bits (482), Expect = 0.0
 Identities = 521/534 (97%), Gaps = 3/534 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgagacaggtgataggctattacagtattttcactcctacttgaagaacttgatgttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 732 actgagacaggtgataggctattacagtattttcactcctacttgaagaacttgaggttt 673

                                                                       
Query: 61  actgtctgagcacacatatgatagtgcatgattggaagacattcttggaaaggcagatt- 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 672 actgtctgagcacacatatgatagtgcatgattggaagacattcttggaaaggcagattg 613

                                                                       
Query: 120 agattttccataggactagttaatcatagaatattcttttgggtggggggctgaaatgaa 179
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 ag-ttttccataggactagttaatcatagaatattcttttgggtggggggctgaaatgaa 554

                                                                       
Query: 180 atgactgatatatgatgattctattctctgttttctagtgaagactatgccgagatatat 239
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 553 atgactgatatatgatgattctattctctgttttctagtgaagactatgctgagatatat 494

                                                                       
Query: 240 gggaagatatgcgaatatttgaatatttttttaaaaaaatcacacatttatgacaagtct 299
           ||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 493 gggaacatatgcgaatatttgaatattttttt-aaaaaatcacacatttatgagaagtct 435

                                                                       
Query: 300 taaggatagtactattttcatcacacatattgttaagtacaaccagaaggacctatgagc 359
           ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 434 taaggatagtactattttcatcacacatattgttaggtacaactagaaggacctatgagc 375

                                                                       
Query: 360 tggctcattgactaagggcccttgttccaagtcttccaaactgagttaggatgtcagagc 419
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 374 tggctcattgactaagggcccttgttccaagtcttccaaactgagttaggttgtcagagc 315

                                                                       
Query: 420 acacaagtttgaagaatagatgccattcttggaagtaacacactgacaaccatacctgaa 479
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 314 acacaagtttgaagaatagatgccattcttggaagtaacacactgacaaccaaacctgaa 255

                                                                 
Query: 480 atcttccatacaaatatgtatacatagtcaccgacatgtaacgaatatatgtgt 533
           ||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 254 atcttccatacaaatatgtatacatagtcacagacatgtaacaaatatatgtgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 932
Length adjustment: 10
Effective length of query: 523
Effective length of database: 922
Effective search space:   482206
Effective search space used:   482206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)