BAC Information

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BAC

Clone NameMSMg01-113L03
Chromosome1 (Build37)
Map Location 135,179,114 - 135,179,445
singlet/doubletsinglet
Overlap genePlekha6
Upstream geneEG638532, Klhdc8a, Nuak2, Tmcc2, Ripk5, Rbbp5, Tmem81, Cntn2, Nfasc, Lrrn2, Mdm4, LOC638636, Pik3c2b, Ppp1r15b
Downstream geneGolt1a, Kiss1, LOC100038824, Ren1, Etnk2, Sox13, LOC667371, Snrpe, Zc3h11a, LOC667118, Lax1, Atp2b4, Optc, Prelp, LOC100042352, LOC100042358, Fmod, Btg2, EG667414, Chit1, Chi3l1, Mybph, Adora1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113L03.T7 (MSMg01no113_l03.b1)MSMg01-113L03.TJ (MSMg01no113_l03.g1)
ACCAG325766AG325767
length711708
length of high quality
(start - end)
262 (38 - 299)332 (68 - 399)
definitionCHROMAT_FILE: MSMg01no113_l03.b1 PHD_FILE: MSMg01no113_l03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:12 2005CHROMAT_FILE: MSMg01no113_l03.g1 PHD_FILE: MSMg01no113_l03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTGCGGCCCTAATACACTCACTATTTCAAAAAATGCGCGGAATTCCTCT
TCTTCCTCCTTCACCTCCCAAGTGCTACGATTACAGTTTTGTGCAACTAA
ACCTGACAAAAATCGTATCATTTTTATATTATTAGGTCTATGATTCATTT
CTCTTTCCTTCTTGTGTTTATTGTGAGATCACTTGAAATGGGCATGGTGG
TGTAAGGCCAGCACTTGCGTGGTGACAAAAAGGATCAGGAATTTAAGATT
ATTTATTAAGTTTGAAGCCAACTCCAACTACTTAAGGTCAAGTCTCACAA
GTAGAGCATATTTTGCAAACAAAAAAAAATGAAAAAAGAAAAAAGAAAAA
CCATCAGGAAGATATGTAGGTTCATTTCAAGACTCTCTTGCTACATGTTC
TGAAGAGCAACCCTCCTCTGGCTACTATGTTGATGACAGAGTTTCACAAC
AAGTTGACATGAAATCTACTCTCCTTTCTCAAGATAGCTTTAAATATTCT
AGGTCCTTTGAGCTTCCAATTTGCCAATTTTAGACCTCGTGTGTCACCTC
TTGCAACAATTACTGACGAATTGTGATTGCATCCAGAGTTCCCCATTTGG
TAGAGTTTAATATTTTTACTCGACCTTATTACTTTACGCATCCGACGATT
TCGTTGATTACTTTGTATGTATGAAAGCATATCCAGTGCTTGCCTGGGTG
CTTGTCAAGGT
ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTCGGCTTGTCTAACCCATCGGCTGCCCACTTT
GCCTTCTGCCTTGTAGAAGTAGGCTCTGGCTGGCTTGCTGCTGTCAGCAG
GGGGACCTAAGGCAGATCCTTCATTCAACACAGCTTGTTTGAGTAACAGT
AGCCCAGGAAAGCACAGCCCAGAAGAGAGGGATGTTCTCTATGGGAACAG
ATTCAGCTTTCCCTTCAGTCTGCCATGGGATGTGCCCAGGCCCTTCTAGG
AAGGAGGGTTGGTGGTAGCCTCCCCCAGAATGTCTCAGCCTGTTCCCTTC
CTGCCAGACTTCGGACCCTAGGGATCCCAGCCCCAGACCCCTTTGCAGCA
GTATAAGGCACCGCTTGTGGAAGGTGGCTTCCCCCGTGTGTTAGTTGCAT
CTTTTCTCACTGTGCTGCTGTGACAGCATGTTTGGCAACTGTAACTTTAT
GGAGGAACAAGGTTTCGTTTCCTCTTACTTTGAGGAATAAAACTCATCGC
CGCGTGGAAGGTGTGGTGTTTGACAGCGCAAAGGAACCCACCTGGTCACT
TGTATCCGCATTCTTGACTCAGACACTGCGGTTTCCTCTCGTTCCGCTCT
TTGTATTATCTCGAATCCTATCCCGGGTGCGGGGCCCGCATGCCTTCCCT
CCCAGTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_l03.g1 MSMg01no113_l03.g1 CHROMAT_FILE:
MSMg01no113_l03.g1 PHD_FILE: MSMg01no113_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:12 2005
         (332 letters)



>mm_chr1_135178914_135179645
          Length = 732

 Score =  611 bits (316), Expect = e-179
 Identities = 328/332 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcggcttgtctaacccatcggctgcccactttgccttctgccttgtagaagtaggctct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcggcttgtctaacccatcggctgcccactttgccttctgccttgtagaagtaggctct 260

                                                                       
Query: 61  ggctggcttgctgctgtcagcagggggacctaaggcagatccttcattcaacacagcttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggctggcttgctgctgtcagcagggggacctaaggcagatccttcattcaacacagcttg 320

                                                                       
Query: 121 tttgagtaacagtagcccaggaaagcacagcccagaagagagggatgttctctatgggaa 180
           ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 321 tttgagtaacagtagcccaggaaagtacagcccagaagagagggatgctctctatgggaa 380

                                                                       
Query: 181 cagattcagctttcccttcagtctgccatgggatgtgcccaggcccttctaggaaggagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagattcagctttcccttcagtctgccatgggatgtgcccaggcccttctaggaaggagg 440

                                                                       
Query: 241 gttggtggtagcctcccccagaatgtctcagcctgttcccttcctgccagacttcggacc 300
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 gttggtggtagcctcccccagaatgcctcagcctgttcccttcctgccagacttcggacc 500

                                           
Query: 301 ctagggatcccagccccagacccctttgcagc 332
           | ||||||||||||||||||||||||||||||
Sbjct: 501 ccagggatcccagccccagacccctttgcagc 532


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 732
Length adjustment: 9
Effective length of query: 323
Effective length of database: 723
Effective search space:   233529
Effective search space used:   233529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)