Query= MSMg01no113_m02.b1 MSMg01no113_m02.b1 CHROMAT_FILE:
MSMg01no113_m02.b1 PHD_FILE: MSMg01no113_m02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:17 2005
(428 letters)
>mm_chr1_195919121_195919947
Length = 827
Score = 760 bits (393), Expect = 0.0
Identities = 416/427 (97%), Gaps = 7/427 (1%)
Strand = Plus / Plus
Query: 4 ggaattcattataaaatccacggtggtcctcaaacatgcagcaactctcctgccctgcct 63
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct: 204 ggaattcattataaaatcca-ggtggtcctcaaacatgcagcaactctcctgccctgact 262
Query: 64 tagcctccaaaatgctctggggttataagcataaactactatccctggctagaaaggact 123
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tagcctccaaaatgttctggggttataagcataaactactatccctggctagaaaggact 322
Query: 124 attttaaataaatcctgatgacattgcaaggaagattcaaaaagatgtatgaacccagct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 attttaaataaatcctgatgacattgcaaggaagattcaaaaagatgtatgaacccagct 382
Query: 184 gttgcccaaagtatcattattgaaagaatcatccagtgtttctgcaagaaaaaaaaaatc 243
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 383 gttgcccaaagtatcattattgaaagaatcacccagtgtttctgcaggaaaaaaaaaatc 442
Query: 244 acacctggttttgtttagttacagaaattagcaatgagattgactttagacagttgggaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 acacctggttttgtttagttacagaaattagcaatgagattgactttagacagttgggaa 502
Query: 304 gaaagaaagaaaaagagaaggaaagaaagagagaaatggagaaagagagaaagaggaaga 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gaaagaaagaaaaagagaaggaaagaaagagagaaatggagaaagagagaaagaggaaga 562
Query: 364 g------aaggagagagagagaaagagaaagagaaggagaaggggaaggagagagagaga 417
| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ggaagagaaggagagagagagaaagagaaagagaaggagaaggggaaggagagagagaga 622
Query: 418 gagagag 424
|||||||
Sbjct: 623 gagagag 629
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 827
Length adjustment: 9
Effective length of query: 419
Effective length of database: 818
Effective search space: 342742
Effective search space used: 342742
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no113_m02.g1 MSMg01no113_m02.g1 CHROMAT_FILE:
MSMg01no113_m02.g1 PHD_FILE: MSMg01no113_m02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:17 2005
(557 letters)
>mm_chr1_196099806_196100762
Length = 957
Score = 1062 bits (549), Expect = 0.0
Identities = 555/557 (99%)
Strand = Plus / Minus
Query: 1 cagaagtaggaaataaccacagtgcaagggaaacacaatctatttgggagttagcttgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 cagaagtaggaaataaccacagtgcaagggaaacacaatctatttgggagttagcttgaa 534
Query: 61 aataaagatacacccatttaattcaattaaatgggagacacagtgttttttctcaattct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 aataaagatacacccatttaattcaattaaatgggagacacagtgttttttctcaattct 474
Query: 121 tccatttcaagtatgctctagaaactttacctcttcttaagtatccttcctccttaaata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tccatttcaagtatgctctagaaactttacctcttcttaagtatccttcctccttaaata 414
Query: 181 ctgttacttctttaatactctaaaaatgatttatatataaagaggtttaagctagcacag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 ctgttacttctttaatactctaaaaatgatttatatataaagaggtttaagctagcacag 354
Query: 241 taaggagacttgtctggagtccacaagatgcatttaacaaatattatttctgtaagcttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 taaggagacttgtctggagtccacaagatgcatttaacaaatattatttctgtaagcttc 294
Query: 301 tctagatcccccctcaattctcttctttggaagttgtaatataggacccaggatctaaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 tctagatcccccctcaattctcttctttggaagttgtaatataggacccaggatctaaag 234
Query: 361 agtgagttgctcctgatccttcctcagtggctctgtgtgtgcatgcatgtgcatgggtgt 420
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 agtaagttgctcctgatccttcctcagtggctctgtgtgtgcatgcatgtgcatgggtgt 174
Query: 421 atgtatgagtatgtgttcatgcacatgagtgcacatatgttcctttgaatgcaggttcat 480
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 173 atgtatgagtatgtgttcatgcacatgagtgcacatgtgttcctttgaatgcaggttcat 114
Query: 481 gtatgcacaggtatgtatatacacacctgtgtcaagaggctagaggtcaacctctgtctc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 gtatgcacaggtatgtatatacacacctgtgtcaagaggctagaggtcaacctctgtctc 54
Query: 541 atatattgcctaccatt 557
|||||||||||||||||
Sbjct: 53 atatattgcctaccatt 37
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space: 518009
Effective search space used: 518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
