Query= MSMg01no113_m03.b1 MSMg01no113_m03.b1 CHROMAT_FILE:
MSMg01no113_m03.b1 PHD_FILE: MSMg01no113_m03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:17 2005
(655 letters)
>mm_chr1_90115787_90116840
Length = 1054
Score = 996 bits (515), Expect = 0.0
Identities = 536/543 (98%), Gaps = 3/543 (0%)
Strand = Plus / Plus
Query: 7 attctcttatcttacacaggtcccaa-gca-cataaccacatgatcagggatgaaaagtc 64
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 205 attctcttatcttacacaggtcccaaagcaacataaccacatgatcagggatgaaaagtc 264
Query: 65 tatagctagcccaaaataaacctttgctcatgagttgctacatctcaggtatttgttaca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tatagctagcccaaaataaacctttgctcatgagttgctacatctcaggtatttgttaca 324
Query: 125 gtaacatacagtttattaacacacctattgttttgacaaatacacataaaacattacaga 184
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtaacataaagtttattaacatacctattgttttgacaaatacacataaaacattacaga 384
Query: 185 cattctgtattagtcagttttgcatcagcataatgaaataaccaaagcaagtaagttaaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cattctgtattagtcagttttgcatcagcataatgaaataaccaaagcaagtaagttaaa 444
Query: 245 agagagaagggctttttaacttagaggttatcttgctttggctcagttctgtgagggtaa 304
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agagagaagggctgtttaacttagaggttatcttgctttggctcagttctgtgagggtaa 504
Query: 305 cagaaggtggcatatcaaacaggagcatgtacatgaacaaaccatgaattatatcttgag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cagaaggtggcatatcaaacaggagcatgtacatgaacaaaccatgaattatatcttgag 564
Query: 365 gcaggaacagggagctagagtctgggctgtcacaatcctctttgaggaagatctttaatg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gcaggaacagggagctagagtctgggctgtcacaatcctctttgaggaagatctttaatg 624
Query: 425 acctatgggcattttaataggccctacctgaaaaaaaaaagttttccctgcttctcaata 484
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 625 acctatgggcattttaataggccctacctgaaaaaaaaa-gttttccctgcttctcaata 683
Query: 485 gcacacactgaagaccaagcttttatcacatggctctttggggacatttcagattcaagc 544
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 684 gcacacactgaagaccaagcttttatcacatggctctttgggggcatttcagattcaagc 743
Query: 545 tat 547
|||
Sbjct: 744 tat 746
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1054
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1044
Effective search space: 673380
Effective search space used: 673380
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no113_m03.g1 MSMg01no113_m03.g1 CHROMAT_FILE:
MSMg01no113_m03.g1 PHD_FILE: MSMg01no113_m03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:17 2005
(491 letters)
>mm_chr1_90152969_90153859
Length = 891
Score = 774 bits (400), Expect = 0.0
Identities = 403/404 (99%)
Strand = Plus / Minus
Query: 86 acattaccactccatataggaccagctcgttctgccctgggacacatcacttcttcgggc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 891 acattaccactccatataggaccagctcgttctgccctgggacacatcacttcttcgggc 832
Query: 146 tttgagcaaatggagtgctatggcttcaatgtgccccaacctagattttatgtgttggga 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 tttgagcaaatggagtgctatggcttcaatgtgccccaacctagattttatgtgttggga 772
Query: 206 atttagttccccaaatcgtatatacatggcattttggaggtgggactcttggagttcatt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 atttagttccccaaatcgtatatacatggcattttggaggtgggactcttggagttcatt 712
Query: 266 agcattagatgtggtgctgaggtcattctcacagtgacctttgtggctttcaaataagga 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 agcattagatgtggtgctgaggtcattctcacagtgacctttgtggctttcaaataagga 652
Query: 326 tccaaggctagcttacacaacacagcagaaggtcctctcagataaaacagatcgcagaac 385
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 651 tccaaggctagcttacacaacacagcagaaggtcctctcagataaaacagatcccagaac 592
Query: 386 cgtaagctacatagatcactatgcttcaaaagtcatctgatctcgggtattttcttaaag 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 cgtaagctacatagatcactatgcttcaaaagtcatctgatctcgggtattttcttaaag 532
Query: 446 caacagagcacacaggtatggggtgggcggggtggggtggggtg 489
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 caacagagcacacaggtatggggtgggcggggtggggtggggtg 488
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space: 423761
Effective search space used: 423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
