BAC Information

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BAC

Clone NameMSMg01-113M15
Chromosome1 (Build37)
Map Location 4,263,300 - 4,263,861
singlet/doubletsinglet
Overlap genenone
Upstream geneXkr4, LOC100038975, LOC664792, LOC619785
Downstream geneRp1h, Sox17, LOC664830, LOC664838, LOC664853, LOC619596, EG619980, LOC100039121, LOC620009, Mrpl15, Lypla1, Tcea1, LOC619829, Rgs20, Atp6v1h
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113M15.T7 (MSMg01no113_m15.b1)MSMg01-113M15.TJ (MSMg01no113_m15.g1)
ACCAG325835AG325836
length700696
length of high quality
(start - end)
632 (69 - 700)568 (68 - 635)
definitionCHROMAT_FILE: MSMg01no113_m15.b1 PHD_FILE: MSMg01no113_m15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:20 2005CHROMAT_FILE: MSMg01no113_m15.g1 PHD_FILE: MSMg01no113_m15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATCATXXXXXXXXXXXXXXXXXXXXXXXCTATTCCAAGAGGACCGCGGA
ATTCTCAACTGTACAAACCAAAGGGCTGAGAAGCACTTGAAAAAATGTTC
AACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCC
ATCTCACACCAGTCAGAATGGCTAGGATCAAAAATTCAAGTGACAGCAGA
TGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGA
TTGCAAGCTTGTACAACCACTGTGGAAATTAGTCTGGTGGTTCCTCAGAA
AACTGGACATAGTACTACTAGATCCAGCAATACCTCTCCTGGGCATATAC
CCAGATATTCCAACTGGTAATAAGGACACATGCTTCACTATGTTCATAGC
AGCCCTATTTATAATATCCAGAACCTGGAAAGAACCCAGATGTCCCTCAA
CAGAGGAATGCATACAGAAAGTGTGGTACATTTACACAATGTAGTACTAC
TCAGCTATTAAAAACAATGAATTTATGAAATTCTTGGGCAAATGGATGTA
TCTGGAGGATATCATCCTGAGTGAGGTAACCCAATCACAAAAGAAGTCAA
TTAATATGCACACACTGATAAGTGGATATTAGCTCAGAAACCTAGAATAC
CCAAGATACAACTTCCAAAACACAAGAAAATCAAGAAGAACGAAGAACGA

CGATGAAGTGCGAGGCTGGCGGCGCCTGGTTCCAAXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTTTTGTTGATGAACAGCAATGTGGAAGTTTAA
AGTGAAAAAATCCTTTCCTTTAAACTTGCTTTTTGGTCATGGTGTTCATC
GCAGCAACAGAAACCCTAAGATACTGAATATGAATGGATTACTTGCTGCA
ATCTCAGAACAAATCCTTTTAGTTATTGTTTTATTTTTTGCACTTTTATT
AGATATTTTCTTAATTTCTATTTAACAAATCCTTAAAGAATGAAAAAATT
ACCCTTTAAAGATGAACAAAGAAAATAGTTTCATGAGTGCAAGTATTCTT
AGTGAAGAATTTATGAATTTGTTGAAATAACAATAGTGGATTTAGAATAC
TACATTAATATATTTGATATGATGTACAACATCATGTTTTGAGATAACTG
ACTATTTTTGAAAGGCAGTCTAGTGTGGGGAAATTCTGTCAGATGGTATT
GTGTGCTGCAGTCTTCATCAGAAGAAGAATCATTCTGTGTGATAAAACTT
TCACTGTCACCTTATTTTAAGAAGTTGTCACAGCTGCTCTGCCATGACCA
GATGGTCACCATTAACATGAAGCAAGTCTGCACTGGCAAAGGATAAAATA
ATTTTGAGATGATCCCGATGATTTTAAGCTTTTTATTTTCCCCAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_m15.g1 MSMg01no113_m15.g1 CHROMAT_FILE:
MSMg01no113_m15.g1 PHD_FILE: MSMg01no113_m15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:20 2005
         (568 letters)



>mm_chr1_4262998_4263961
          Length = 964

 Score = 1052 bits (544), Expect = 0.0
 Identities = 559/566 (98%), Gaps = 5/566 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ttgttgatgaacagcaatgtggaagtttaaagtgaaaaaatcctttccttta-aacttgc 62
           |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct: 864 ttgttgatgaacagcaatgtggaagtttaaagtgaacaaatcctttcctttacaacttgc 805

                                                                       
Query: 63  tttttggtcatggtgttcatcgcagcaacagaaaccctaagatactgaatatgaatggat 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tttttggtcatggtgttcatcgcagcaacagaaaccctaagatactgaatatgaatggat 745

                                                                       
Query: 123 tacttgctgcaatctcagaacaaatccttttagttattgttttattttttgcacttttat 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tacttgctgcaatctcagaacaaatccttttagttattgttttattttttgcacttttat 685

                                                                       
Query: 183 tagatattttcttaatttctatttaacaaatccttaaagaatgaaaaaattaccctttaa 242
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 684 tagatattttcttaatttctatttaacaaatccttaaagaatgaaaaaaataccctttaa 625

                                                                       
Query: 243 agatgaacaaagaaaatagtttcatgagtgcaagtattcttagtgaagaatttatgaatt 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agatgaacaaagaaaatagtttcatgagtgcaagtattcttagtgaagaatttatgaatt 565

                                                                       
Query: 303 tgttgaaataacaatagtggatttagaatactacattaatatatttgatatgatgtacaa 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgttgaaataacaatagtggatttagaatactacattaatatatttgatatgatgtacaa 505

                                                                       
Query: 363 catcatgttttgagataactgactatttttgaaaggcagtctagtgtggggaaattctgt 422
           ||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 catcatgttttgagat----gactatttttgaaaggcagtctagtgtggggaaattctgt 449

                                                                       
Query: 423 cagatggtattgtgtgctgcagtcttcatcagaagaagaatcattctgtgtgataaaact 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 cagatggtattgtgtgctgcagtcttcatcagaagaagaatcattctgtgtgataaaact 389

                                                                       
Query: 483 ttcactgtcaccttattttaagaagttgtcacagctgctctgccatgaccagatggtcac 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ttcactgtcaccttattttaagaagttgtcacagctgctctgccatgaccagatggtcac 329

                                     
Query: 543 cattaacatgaagcaagtctgcactg 568
           ||||||||||||||||||||||||||
Sbjct: 328 cattaacatgaagcaagtctgcactg 303


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 964
Length adjustment: 10
Effective length of query: 558
Effective length of database: 954
Effective search space:   532332
Effective search space used:   532332
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)