BAC Information

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BAC

Clone NameMSMg01-113N08
Chromosome1 (Build37)
Map Location 159,586,520 - 159,587,048
singlet/doubletsinglet
Overlap genenone
Upstream geneTor3a, C530043G21Rik, LOC433368, Ralgps2, Angptl1, 4930439D14Rik, 1700057K13Rik, Rasal2, Gabarapl2-ps1_1522.1, 2810025M15Rik, BC026585, Lztr2, LOC664935, LOC100039217
Downstream gene6430517E21Rik, Astn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113N08.T7 (MSMg01no113_n08.b1)MSMg01-113N08.TJ (MSMg01no113_n08.g1)
ACCAG325868AG325869
length715720
length of high quality
(start - end)
533 (42 - 574)561 (67 - 627)
definitionCHROMAT_FILE: MSMg01no113_n08.b1 PHD_FILE: MSMg01no113_n08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:23 2005CHROMAT_FILE: MSMg01no113_n08.g1 PHD_FILE: MSMg01no113_n08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAATCTCCTCCGGATTCAGTGCTGCATTTTGGAGTCAGCCAGGTTAGGTA
TGACTACGTGTCCTATGGAAAGATTTCTGGGAAGTTAGTTCTCAATGGCT
ACCTCTAGTTGACCTCACTTGTACAAGTACTTTGCACTCAGCAAGGGTGT
ATTTAACACTCAGTATACTGGGCACTGTGCAAAGTACCTGAGAGATGCAG
AGAAATCTAAAACAGTTCCCAATTTCTAGAACTTTATGATCTGGTAAAAG
ACTTATACACAAAATATAAAGAATCTTTGACTCCATGAAGCTGCAGCTCT
AAGGAATGCTGAATGATGAGCAGGGGAGAGAGTTAGGACACAGTACTGGA
CTCACTGTCTGGCATTTGGTAAGTACCTCATGTATGCAACATGAAAGGCA
AAGGTGGTATATATAGTTAGAAATGTGCAAGGAGAGAGGGGTGAGTGTCT
CTCTGGTGCCTTCTTCTGCTCATACCCAGAGTAGGACTAGACCAGAGGTG
GGCGACTTCAGCTGCATTGTGACCAAGAGCAACAGTGACAGAGTACCCAT
CTACAAAAACAGCATACAGATGGGTCACACATCACAGTCCCGTAAGCGTG
GATAAGCACATGTGGGGTCATTCATAGGACTCTTCTTAAAGGATCTACTC
TTTCCCCCAGTGTAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCAAGAAAACACAGAAAAAGATATGAATGAAATAA
GGAAGTCAATTATGAATATTAAAGTATATCTCAGTAAAGAGACAGAAATA
CTAAAGAAAACCCAAATAGAAATTATGCTGGAGATGAAAATTGCAGGAAG
TCAACTAAAAAGCTCAGTCAAAAAATCTTAGCAACAGAACAGATCATATG
GAGCGCAAAATATCACAGCTTGGAAACAAGGTAGGAAAATTAAATCATTT
AGTCAAAAAGTAATAAAAATATTTTAAATGCATGAATAGACTGTTCAAGA
TCTTCATGAAAAAATTAAGTGAAGAAGGTGGCATAGAATCTTGAAGTCCT
ACAAAATTTCCCAAACTTGGCAAGAAAGATGTCCAAGAAGTAATGTAACA
CCAAATAGACAGAATCAGAAAAGAAACTCCTCATATCATATAATAACATT
AAATCAGCCTGGCGAAGAATGTGTTTTAAAGCTATAAGAGAGTGAGTCAC
TCTCTTATAAAAGGAGGCCTATCAGAATAACCTTATTTTCTCAGCGAAAA
TTTCAAAAGCCACAAAGGCTTGATGGATTGTATTTCACTTTCTGAAAGAT
TATAGACACAACCCAGATCCAGTATACCCTTACAAAAATATACTATGATA
ACTAAAGGAAGAAACAAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_n08.b1 MSMg01no113_n08.b1 CHROMAT_FILE:
MSMg01no113_n08.b1 PHD_FILE: MSMg01no113_n08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:23 2005
         (533 letters)



>mm_chr1_159586318_159587248
          Length = 931

 Score =  938 bits (485), Expect = 0.0
 Identities = 519/531 (97%), Gaps = 3/531 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaatt-caatctcctccggattcagtgctgcattttggagtcagccaggttaggtatga 62
           |||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 203 ggaattccaatctcctctggattcagtgctgcattttggagtcagccaggttagttatga 262

                                                                       
Query: 63  ctacgtgtcctatggaaagatttctgggaagttagttctcaatggctacctctagttgac 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ctacgtgtcctatggaaagatttctgggaagttagttctcaatggctacctctagttgac 322

                                                                       
Query: 123 ctcacttgtacaagtactttgcactcagcaagggtgtatttaacactcagtatactgggc 182
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ctcgcttgtacaagtactttgcactcagcaagggtgtatttaacactcagtatactgggc 382

                                                                       
Query: 183 actgtgcaaagtacctgagagatgcagagaaatctaaaacagttcccaatttctagaact 242
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 383 actgtgcaaagtacctgagagatgcagagacatctaaaacagttcccaatttctagaact 442

                                                                       
Query: 243 ttatgatctggtaaaagacttatacacaaaatataaagaatctttgactccatgaagctg 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ttatgatctggtaaaagacttatacacaaaatataaagaatctttgactccatgaagctg 502

                                                                       
Query: 303 cagctctaaggaatgctgaatgatgagcaggggagagagttaggacacagtactggactc 362
           |||||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||
Sbjct: 503 cagctctaaggaatgctgaatgatgagcagg--agagagttaggacgcagtactggactc 560

                                                                       
Query: 363 actgtctggcatttggtaagtacctcatgtatgcaacatgaaaggcaaaggtggtatata 422
           |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 561 actgtctggcatttggtaagtacctcatgtatgcaaaatgaaagggaaaggtggtatata 620

                                                                       
Query: 423 tagttagaaatgtgcaaggagagaggggtgagtgtctctctggtgccttcttctgctcat 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tagttagaaatgtgcaaggagagaggggtgagtgtctctctggtgccttcttctgctcat 680

                                                              
Query: 483 acccagagtaggactagaccagaggtgggcgacttcagctgcattgtgacc 533
           ||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 681 acccagactaggactagaccagaggtgggcgacgtcagctgcattgtgacc 731


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 931
Length adjustment: 10
Effective length of query: 523
Effective length of database: 921
Effective search space:   481683
Effective search space used:   481683
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)