BAC Information

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BAC

Clone NameMSMg01-113O18
Chromosome1 (Build37)
Map Location 77,617,207 - 77,617,575
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039137, Tfdp1-ps, Epha4, LOC100039330
Downstream genePax3, LOC100039210, Sgpp2, LOC100039382, Farsb, Mogat1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113O18.T7 (MSMg01no113_o18.b1)MSMg01-113O18.TJ (MSMg01no113_o18.g1)
ACCAG325932AG325933
length6851,002
length of high quality
(start - end)
367 (44 - 410)---
definitionCHROMAT_FILE: MSMg01no113_o18.b1 PHD_FILE: MSMg01no113_o18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:30 2005CHROMAT_FILE: MSMg01no113_o18.g1 PHD_FILE: MSMg01no113_o18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCAAAATTGCGGCGCTAATACGACTCCTATTCCAAGAGGACCGCGGAAT
TCTCTCATTCTCCCTTGTAGGTTCTGGGAACCAAACTCAGGTTGTCAGGC
TTAAGGGCAGATGCCCTTACCCACTGGCACCTCTCACCACCTTCTCATCC
CCTTTCTCAGCTTCTAAGGCTCTGACCCAAATTATTCCATGAATATTCTT
TGAAGACATTAACTTTGTTTCAATCATTTGGCCATTGCAACTATGAGACA
GTGACTAATCCTGAAAATTGCTGTTGCTGATTGATGAATCTGTAATACAA
GCATTTAGCTACCAAAAGCGTGGATACGCATTTCAGCTTTCTGAGATATC
CTCAGATTCCTCCATTACTTAAATTATCTCTGTGTTTCTCCCCCGCCCCC
CCACAGTTTTCCACCCCCGCTGTTTACATTATATTTCATTGTGATCTATG
AATTTTTAATTTGTTGTTTGTCTTTTTTTTTCTGAACTTGGCTATCTCAT
AATATATAAGGAACATTTGTAATTTTTCTGCCCTGTTATACATTCCTCCA
TCTTAAATTAATTCCGTGGTCTTTGTCTAAAATAAAATCGGCAGCTTATT
TTTGTCGTATTTGAAAAACTTACGACGGAAGGTATTCTTTTCCCGAGGAG
CCATACGAATGCCTGACTCTCATTTAACGCTCCCA
GAAACATACCTCGGGGTGCAGGGTGGGGTGGAGAGCCTTCACTCGTATAC
GCACAATCCCTAATATCCCCGTCTTTTAATCTTTCTTTGCGCCTCGTGGG
ACTGCTGGCGTATGGCAACACGACATTACCCACCACCAATTTGGTCAATA
TCGACAACGGGAATANTCTGAACATACGGTCCGTGTTAATTGCAGTAGTT
GGACTTTATAATTTATTTATTATTGTCTATACCTCTCCTCTCNCAGAGAT
ACATTTTTTGGACACTAGACGCGAACCTATACGCCCGACTCATTTGCGGT
TACCGTATTCCTCTCTCCGGCGATAAAGCGTTGCAAGATCAGAAANAGGG
CGACCCCGAACCATATCATTGGCTCCACCCCTTCCAAACTTCTAAACTGG
GGACTTATTACATTACACATTNTATTTCTTTTCTAATCTCAGGTTTTCTT
CCCCTCTCTTCTCTTGGGGTCGACCTCTCCAACGACCCCTTTTATTATTA
ACACACTGGGCGTACACCTCGATTACTTTTTTCTTTTCACCCCCTCCCCA
TTGTCGTGACAGCCCCGTTTTCCCCCCGTTACAATTGCAGCACCTTTGCC
TTTTTCCCCCGTGTCCCATTGTTCTTACCCAATATCTTTGTTTTCGCCGT
ATTTCGTTTTATTGTAATCCAATCGCCGTCCATTCTGTTGCGTTCGCGAT
GCGCGCCAAAATCCCGGCCGCTTTTCGCGTCTCACACCTCATTCGTGATC
TCGCCGTCTATTTATCAATTAATATCGTTTACCCATGGTGTTCCCAATTG
CTTGTACCTGCTTTTACCGTTCCATCCCACGTTTTTTCCCCATCACTATT
CCTATTTTACGCCTTTTACCCGGTGGCTATATCCCCGTTTTTATTTTATA
CATCCGTGTCTCCGTGTACTTTATACTGTTAACTCTGTCCCGATGCGCGT
AATACCTCTGTGCTGTTCGAGAACTTAGATCGCGCGCTCCGCTATTATGT
AC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_o18.b1 MSMg01no113_o18.b1 CHROMAT_FILE:
MSMg01no113_o18.b1 PHD_FILE: MSMg01no113_o18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:30 2005
         (367 letters)



>mm_chr1_77616925_77617691
          Length = 767

 Score =  636 bits (329), Expect = 0.0
 Identities = 357/369 (96%), Gaps = 5/369 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattctctcattctcccttgtaggttctgggaaccaaactcaggttgtcaggcttaagg 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 gaattctctcattctaccttgtaggttctgggaaccaaactcaggttgtcaggcttaagg 592

                                                                       
Query: 64  gcagatgcccttacccactggcacctctcaccaccttctcatcccctttctcagcttcta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 gcagatgcccttacccactggcacctctcaccaccttctcatcccctttctcagcttcta 532

                                                                       
Query: 124 aggctctgacccaaattattccatgaatattctttgaagacattaactttgtttcaatca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 aggctctgacccaaattattccatgaatattctttgaagacattaactttgtttcaatca 472

                                                                       
Query: 184 tttggccattgcaactatgagacagtgactaatcctgaaaattgctgttgctgattgatg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 tttggccattgcaactatgagacagtgactaatcctgaaaattgctgttgctgattgatg 412

                                                                       
Query: 244 aatctgtaatacaagcatttagctaccaaaagcgtggatacgcatttcagctttctgaga 303
           | | | ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 agtttataatataagcattcagctaccaaaagcgtggatacgcatttcagctttctgaga 352

                                                                       
Query: 304 tatcctcagattcctccattacttaaattatctctgtgtttctcccccgcccccc----- 358
           |||||||||||||||| ||||||||||||||||||||||||||||||||||||||     
Sbjct: 351 tatcctcagattcctctattacttaaattatctctgtgtttctcccccgcccccccccca 292

                    
Query: 359 cacagtttt 367
           |||||||||
Sbjct: 291 cacagtttt 283


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space:   271364
Effective search space used:   271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)