BAC Information

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BAC

Clone NameMSMg01-114J21
Chromosome1 (Build37)
Map Location 74,660,069 - 74,660,533
singlet/doubletsinglet
Overlap geneStk36
Upstream geneTns1, Rufy4, Il8rb, Il8ra, Arpc2, Gpbar1, Aamp, Pnkd, Tmbim1, 2410125D13Rik, Gm216, Slc11a1, Ctdsp1, Vil1, Usp37, Rqcd1, Plcd4, Zfp142, Bcs1l, Rnf25
Downstream geneTtll4, Cyp27a1, Prkag3, Wnt6, Wnt10a, LOC100042901, Cdk5r2, Fev, Cryba2, Ccdc108, Ihh, Nhej1, Slc23a3, 1810031K17Rik, BC038286, Zfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16, Tuba4a, A630095N17Rik, Dnajb10, Ptprn, Resp18, Dnpep, Des, Speg, Gmppa, Accn4, D1Bwg1363e, A230078I05Rik, AW822216, Inha, Stk11ip, Slc4a3, LOC100039069, LOC383531
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114J21.T7 (MSMg01no114_j21.b1)MSMg01-114J21.TJ (MSMg01no114_j21.g1)
ACCAG326453AG326454
length725729
length of high quality
(start - end)
100 (42 - 141)487 (76 - 562)
definitionCHROMAT_FILE: MSMg01no114_j21.b1 PHD_FILE: MSMg01no114_j21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:20 2005CHROMAT_FILE: MSMg01no114_j21.g1 PHD_FILE: MSMg01no114_j21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CATTTTTTTGCACATTTTTTTCCAATTCATTCCTGAATTCTTTCTATTAG
TTTATATAATGGGTTTTGTTTCATAATGACCTTAACATTACATCACGTAC
GACAACAAGCGTAGGACAACCTGCACAGATTACCAAGACCCTATTTCAAA
TGTTAATGACATTAACATATGATTATGTGACTCGGCAGTTGAGTGCTTGC
CTAGCATCTGTGAGGCTCTGGGTTCAATCCCTAGAACCTCAAGAAGAAAT
TACTCTGCGACATCACTCTAGCTAGCATTGTTCCTTTGCCATGGACATCA
TTTAATGTTAGAGCCTAAGCCGCCAATTATCTTTTGCCTCCAGAGATTGT
TAGAACCCACTCTTCTCTTTAAATTAAATTCTATCATTTTATTTTTTAAA
ACTCAAAATGACGATTCAAACTTTACTTAGACCAAACACAAGTATGATGG
GTATGTTAGACCAAATCTAAACACAACTATACATTGAGTTCCCAATGTGT
ACGATCTTACACACCGCTATATCCCAACGCTTTTTTGAGACCGGATCTTT
TCTAGAGTCCAGGCTGTGTTTTAATCTCACCACCCTACTTACGTCTCACC
CAACAGTTATAGCACCTTCGCCTTTTCTCCCTTCCTGCCTCTTTCTCTTC
CGCCCTCTTCCCCCTCAGTTATCTG
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTATATAGTCTCATAATTATTATTAT
TGTCTTTTAACATGTTTGCTTGCATGTGTATCTACACACCATGCACATGC
CTGATGCCTGAGGAGATCAGAGAAGGTAGTGGATTTCTTGGAACTGGAAT
TGTGGATGATTGTGAGTCAGCTACCACATGGGTAGTAGGAATCGAACCAG
GGCTTCTGCAAAAATAAATGCTCTTAACTGCTGAACCACTTTTCCAGCCC
CATGATACAAACTGAAATTATTTCAAAATAAATTACAACCCTACAATAGG
CACAAAAGGTTGAAGAAGAAATACGTGCTGTGATATAGAATCAAGGTCTA
AAATAGATCATATGCCAACAGAGGTACAATGTAAGGCAACACAAACAGGA
TAATGTAGACAAACTGCACATGTACATTTATGTACATGTGCAAAAGTCAG
AAAGCTTGAAGCTTGAAAGGAGACAGATTAGTAATGGGAGCCATCTTTGT
AAGTGCAGTGTGGTTCAACACAGAGACCTTCATTTGCATTTATGTTTTGC
TTTGTTTTGCTTTTTAAGATAAGCTTTTATTACGTAGCCCAGGCTAGCTG
GATATTCTTAGGCTCAGGAGATTCTCTTCTCTCACATCTCAAAAAGAATG
AATATAGGGAATATGCTAACATCTACCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_j21.g1 MSMg01no114_j21.g1 CHROMAT_FILE:
MSMg01no114_j21.g1 PHD_FILE: MSMg01no114_j21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:20 2005
         (487 letters)



>mm_chr1_74659643_74660533
          Length = 891

 Score =  820 bits (424), Expect = 0.0
 Identities = 454/466 (97%), Gaps = 6/466 (1%)
 Strand = Plus / Minus

                                                                       
Query: 27  gtcttttaacatgtttgcttgcatgtgtatctacacaccatgcacatgcctgatgcctga 86
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 891 gtcttttaacatgtttgcttgcatgtgtatctacacaccatgcacatgcctgatgcctga 832

                                                                       
Query: 87  gg-agatcagagaaggtagtggatttcttggaactggaattgtggatgattgtgagtcag 145
           || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 ggaag-tcagagaaggtagtggatttcttggaactggaattgtggatgattgtgagtcag 773

                                                                       
Query: 146 ctaccacatgggtagtaggaatcgaaccagggcttctgcaaaaataaatgctcttaactg 205
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 772 ctaccacatgggtagtaggaatcgaaccggggcttctgcaaaaataaatgctcttaactg 713

                                                                       
Query: 206 ctgaaccacttttccagccccatgatacaaactgaaattatttcaaaataaattacaacc 265
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 712 ctgaaccacttttccagccccatgatacaaactgaaattatttcaaaataaattacaact 653

                                                                       
Query: 266 ctacaataggcacaaaaggttgaagaagaaatacgtgctgtgatatagaatcaaggtcta 325
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 652 ctacaataggcacaaaaggttgaagaagaaatatgtgctgtgatatagaatcaaggtcta 593

                                                                       
Query: 326 aaatagatcatatgccaacagaggtacaatgtaaggcaacacaaacaggataatgtaga- 384
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 592 aaatagatcatatgccaacagaggtacaatgtaaggcaacacaaacaggataatgtagac 533

                                                                       
Query: 385 ---caaactgcacatgtacatttatgtacatgtgcaaaagtcagaaagcttgaagcttga 441
              |||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||
Sbjct: 532 agccaaactgcacatgtacatgtatgtacatgtgcaacagtcagaaagcgtgaagcttga 473

                                                         
Query: 442 aaggagacagattagtaatgggagccatctttgtaagtgcagtgtg 487
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 aaggagacagattagtaatgggagccatctttgtaagtgcagtgtg 427


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 891
Length adjustment: 10
Effective length of query: 477
Effective length of database: 881
Effective search space:   420237
Effective search space used:   420237
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)