BAC Information

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BAC

Clone NameMSMg01-114N22
Chromosome1 (Build37)
Map Location 148,291,475 - 148,292,137
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383571
Downstream geneB830045N13Rik, LOC100043240
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114N22.T7 (MSMg01no114_n22.b1)MSMg01-114N22.TJ (MSMg01no114_n22.g1)
ACCAG326645AG326646
length724722
length of high quality
(start - end)
660 (38 - 697)374 (77 - 450)
definitionCHROMAT_FILE: MSMg01no114_n22.b1 PHD_FILE: MSMg01no114_n22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:40 2005CHROMAT_FILE: MSMg01no114_n22.g1 PHD_FILE: MSMg01no114_n22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATG
TCCTCTTTTTCTGTACCTATTTTCATGATGTGTGTGTGTGTGTGTATGTG
TGTGCATGTATGTGTGCCTGTGTATGTGTGTGCATGTCTGTGTGCCTGTG
TGTGTGTGTGTGATTCATGCTGAATCCATATAGTGTTGCTAATATGTTTA
TGACTGTGTTCAGTGATGACAACTTTAGATTGAGAAACATATAGAAGGAT
GAATATCCCCCCCCCTTTTTTTTTCTTCATAGCAACTATTAATGGCATGA
AGCCTTTTAACCTAGGCATAGTCTGGGTTGATATTTCCCCTGTTCACCTT
GCGATGTTAATTGTTGTTTTATTGTGCAGTCATTTTGTCCTTGAGACTTC
TATTTATTTCTTCTGACCTTCTCTGTATGCTTCTTCTCCACCTAACACTC
GGGTATATTACTCTGATAATCCAGGGCCATGGAATTCTGTTTTGTGGACT
CTTCACATGAAGCACTTCTGAACTTCTCATAGTAGTCTTTACCTCTTCCG
CACCATCCCACTCATCATTGTTGCTTGTCTCTGTTTTATATTTGATATAA
AAATGGTTACATTCTTTCTAGCTGATAGTTTTTCACTGTATTCTATGTCC
ACTATTGTAAATAAAGTTATTAGGAAAATATATCACTTATATCATCACAT
CAAAATCAGATCACTTTCAGTTAC
CGTTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATATATTCAACCATCCCTGCATC
CCTGAGATGAAGCCTACTTGATCATGATGGAGGATCATTTGGTTATATTC
TTGGATTCGGTTTGCAAGTATTTTATTGAGTATTTTTGCATCGATATTCA
TAAGGGAAATTGGTCTAAAGTTCTCTTTCTTCATTGGGTCTTTGTGTGGT
TTAGGTATCAGAGTAATAGTGGCTTCATAGATGGAATTGGTTGGAAAACC
TTCTGTTTCTATTTTGTGGAATAGTTTGAGGAGTATTGGCATTAAGTCTT
TTTTATGGTCTGATAGATTTCTGTACTAAAACCGGCTGGTCCTGTTTTTT
GTTTGTTTGTTTTTTGCTTTTTGTTTTTTTTCCCGTTGGGAGACTATTAA
TGATGGTTTTTATTCCTTTAAGGGATATGGGACTGTTTAGATAATTTATC
TGATCCTAATTTAACTTTGGTACCTGATATCCGTTAAGATAATTTTACCT
TCTCTTCCCATTTTTCTCAGGCTTGGTGAGTATAACCCTCTGTACTATCA
TGCGGTGAATTTTTTGATCTCCTCCCTTTCCGGCATTAGGACCCCCTTTT
TCCATTCTGATTTTGGTACATAAAGAAACCGGCCCTGGTCCTCTTTTAGG
TAGTCTTTTCTCCCGCTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_n22.b1 MSMg01no114_n22.b1 CHROMAT_FILE:
MSMg01no114_n22.b1 PHD_FILE: MSMg01no114_n22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:40 2005
         (660 letters)



>mm_chr1_148291281_148292337
          Length = 1057

 Score = 1218 bits (630), Expect = 0.0
 Identities = 652/666 (97%), Gaps = 13/666 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatgtcctctttttctgtacctattttcatga----tgtgtgtgtgtgtgtgtat 60
           |||||||||||||||||||||||||||||||||||||    ||||||||||||||||| |
Sbjct: 195 gaattcatgtcctctttttctgtacctattttcatgatgtgtgtgtgtgtgtgtgtgtgt 254

                                                                       
Query: 61  gtgtgtgcatgtatgtgtgcctgtgtatgtgtgtgcatgtctgtgtgcc------tgtgt 114
           |||||||||||||||||||||||||||||||||||||||||||||||||      |||||
Sbjct: 255 gtgtgtgcatgtatgtgtgcctgtgtatgtgtgtgcatgtctgtgtgcctgtgtgtgtgt 314

                                                                       
Query: 115 gtgtgtgtgtgattcatgctgaatccatatagtgttgctaatatgtttatgactgtgttc 174
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gtgtgtgtgtgattcatgctgaatccatatagtgttgctaatatgtttatgactgtgttc 374

                                                                       
Query: 175 agtgatgacaactttagattgagaaacatatagaaggatgaatatccccccccctttttt 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||
Sbjct: 375 agtgatgacaactttagattgagaaacatatagaaggatgaatatccccccc---ttttt 431

                                                                       
Query: 235 tttcttcatagcaactattaatggcatgaagccttttaacctaggcatagtctgggttga 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tttcttcatagcaactattaatggcatgaagccttttaacctaggcatagtctgggttga 491

                                                                       
Query: 295 tatttcccctgttcaccttgcgatgttaattgttgttttattgtgcagtcattttgtcct 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tatttcccctgttcaccttgcgatgttaattgttgttttattgtgcagtcattttgtcct 551

                                                                       
Query: 355 tgagacttctatttatttcttctgaccttctctgtatgcttcttctccacctaacactcg 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 tgagacttctatttatttcttctgaccttctctgtatgcttcttctccacctaacactcg 611

                                                                       
Query: 415 ggtatattactctgataatccagggccatggaattctgttttgtggactcttcacatgaa 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 ggtatattactctgataatccagggccatggaattctgttttgtggactcttcacatgaa 671

                                                                       
Query: 475 gcacttctgaacttctcatagtagtctttacctcttccgcaccatcccactcatcattgt 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 gcacttctgaacttctcatagtagtctttacctcttccgcaccatcccactcatcattgt 731

                                                                       
Query: 535 tgcttgtctctgttttatatttgatataaaaatggttacattctttctagctgatagttt 594
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 tgcttgtctctgttttatatttgatataaaaatggttacattctttctagctgatagttt 791

                                                                       
Query: 595 ttcactgtattctatgtccactattgtaaataaagttattaggaaaatatatcacttata 654
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 ttcactgtattctatgtccactattgtaaataaagttattaggaaaatatatcacttata 851

                 
Query: 655 tcatca 660
           ||||||
Sbjct: 852 tcatca 857


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 67
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1057
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1047
Effective search space:   680550
Effective search space used:   680550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)