BAC Information

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BAC

Clone NameMSMg01-114O06
Chromosome1 (Build37)
Map Location 194,097,146 - 194,097,429
singlet/doubletsinglet
Overlap geneKcnh1
Upstream geneNenf, 2310028N02Rik, Ppp2r5a, LOC100039501, LOC667044, Dtl, Ints7, Lpgat1, Nek2, 4930557M11Rik, Slc30a1, 3322402L07Rik, LOC100042611, Traf5, Traf5, LOC100042625, Rcor3
Downstream geneHhat, A730013G03Rik, Sertad4, LOC100039677, Syt14, AA408296, Irf6, A130010J15Rik, Traf3ip3, Hsd11b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114O06.T7 (MSMg01no114_o06.b1)MSMg01-114O06.TJ (MSMg01no114_o06.g1)
ACCAG326660AG326661
length674702
length of high quality
(start - end)
293 (45 - 337)336 (75 - 410)
definitionCHROMAT_FILE: MSMg01no114_o06.b1 PHD_FILE: MSMg01no114_o06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:42 2005CHROMAT_FILE: MSMg01no114_o06.g1 PHD_FILE: MSMg01no114_o06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAACGTCATATTTGCGGCGCTATACACTCACTATTCCAGAGGATCCGCG
GAATTCAATGGGAATCGAAAACTGAACACATCAGGACCAGTGGGGTGCCA
CTGAGGCAGAACTAAAAGAGAGGCATGCAGAGACAAAACAGGAGTCCTGG
CCAATGGNTCCAACCCCTCACCTTAAGAACCTCTGTCAAGAACAAGCTAG
AACAAAGCAAGCAGAAGGGATGACAGGCAGCAGAGTCAGTCGGAGCCAAA
GCAAAAGGAGAGAGCACAGCCAGTAGTTTTTAAAAGATTAGAAATAACAC
TGGGACTGAGGAGTGGCTTGTAGCTCAGTGATCAAGCGCCCTGGGGTTCA
ACCGCCCAGCNAGCAAAATATACCAGTAAATAGTTGGTTTAAAAAAAAAC
CTGTCCAAAGAAAAGGCAAATGGACGGAATCGGGGCCCCAGGGTTTCTTG
ACCAAGGGAAATTGCCTGAAACCCGGAAGGGACCCCCCCCGGACTCCCCC
AGGGGATCCCAAAAAACCCCCTGGGGGGGGGAAAAAAAACTTCTGCAAGG
AGTCCCGCTTTCAAAACACCAAAATTTCGGGGGAACCTTCCCTCGGGAAA
AAAAAAATCTTTTTCCCGTGGGAAAAAAATCTCCCCCCCGTGCAAAAACA
GACAAAGGGGCTTCCCCTCCCCCG
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCATTTGTTGGGACTCCATAGTAAGAA
ACACACCAAAAAACTTCTGGTGGTGTGCCACGGCTTCTGTGCTTGCTGTT
TCTGTGAACTTGGGCTGATTGCCAGAGTGATGTCAGCTGAGATAGATAAA
CTTGCTAAGGCACGCCCCATGGAGGACATGTGATGTTTGAAGGGAATATA
AATAGAACTCAACGGACAGTGTTGGAGGCTGAGCTTGGCTTGCCTATAGA
GCTAGCTGTGCAATGCTCATTGGTCTTGCGTCTTTGCTTCCCTGAGAGAG
GAGGCATAGCCTCTCCTGGCATCCCTCCTGCTAACTTGTGATGAGGCTGA
GGCCTGGCTGTCTCTGCTAGGTCATGTCACTGCTGCATGATTTTGTGTTT
GCTATCCTGAACCTACAGAACTGGACTGCTGGTGTATCTGTGAAGTGTTT
ACGAGTGGCCGGAGCTGCTGCTGCTAACCTGTGAACTGAACTGCTGACCT
CCAGACAACCAAGATGAACGTTGCTCCAAAGAAGCATTTCTGAACTCGCC
CACCTCCTTTTCCACTACCTCCTGGGGGTGGTGGGCTAAAAGAGAGGCTA
AAATTAACCCTCCTTATAACACGATTCTAACAATTAAAGTTACCTACCTC
CC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_o06.b1 MSMg01no114_o06.b1 CHROMAT_FILE:
MSMg01no114_o06.b1 PHD_FILE: MSMg01no114_o06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:42 2005
         (293 letters)



>mm_chr1_194096940_194097630
          Length = 691

 Score =  493 bits (255), Expect = e-144
 Identities = 278/286 (97%), Gaps = 2/286 (0%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcaatgggaatcgaaaactgaacacatcaggaccagtggggtgccactgaggcaga 66
           ||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 490 gaattcaataggaat-gaaaactgaacacatcaggaccagtggggtgcgactgaggcaga 432

                                                                       
Query: 67  actaaaagagaggcatgcagagacaaaacaggagtcctggccaatggntccaacccctca 126
           ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 431 actaaaagagaggcatgcagagacaaaacaggagtcctggccaat-gatccaacccctca 373

                                                                       
Query: 127 ccttaagaacctctgtcaagaacaagctagaacaaagcaagcagaagggatgacaggcag 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ccttaagaacctctgtcaagaacaagctagaacaaagcaagcagaagggatgacaggcag 313

                                                                       
Query: 187 cagagtcagtcggagccaaagcaaaaggagagagcacagccagtagtttttaaaagatta 246
           ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||
Sbjct: 312 cagagtcagtcggagccaaagcaaaattagagagcacagccagtagtttttaaaagatta 253

                                                         
Query: 247 gaaataacactgggactgaggagtggcttgtagctcagtgatcaag 292
           ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 252 gaaataatactgggactgaggagtggcttgtagctcagtgatcaag 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 691
Length adjustment: 9
Effective length of query: 284
Effective length of database: 682
Effective search space:   193688
Effective search space used:   193688
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)