Query= MSMg01no114_o15.b1 MSMg01no114_o15.b1 CHROMAT_FILE:
MSMg01no114_o15.b1 PHD_FILE: MSMg01no114_o15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:43 2005
(620 letters)
>mm_chr1_73068705_73069724
Length = 1020
Score = 1168 bits (604), Expect = 0.0
Identities = 613/616 (99%)
Strand = Plus / Plus
Query: 5 gaattctcatatgtgacaatctcaaaagcagagatgtggaacgcttgcattttacccctg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcatatgtgacaatctcaaaagcagagatgtggaacgcttgcattttacccctg 264
Query: 65 cccctcatgtccctgtgttgggaaagcagaagtaacttgcctagaaaaagtttaggtttt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cccctcatgtccctgtgttgggaaagcagaagtaacttgcctagaaaaagtttaggtttt 324
Query: 125 taggtaaggaccagaaccacacccagttgtatttgaacgctgcactagctagattttatt 184
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taggtaaggaccggaaccacacccagttgtatttgaacgctgcactagctagattttatt 384
Query: 185 gtcaagaagctcttgatacagggcagccttattctcatcagaggaaatgtgaagggtaaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtcaagaagctcttgatacagggcagccttattctcatcagaggaaatgtgaagggtaaa 444
Query: 245 gctacaggatggcctggcttctggtggcgattctgtcacaagcagaaatgtgtttcctcc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gctacaggatggcctggcttctggtggcgattctgtcacaagcagaaatgtgtttcctcc 504
Query: 305 agagaccactcttctgtgatagggacattttcttcatgctggaaaactgagcttaaaaca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agagaccactcttctgtgatagggacattttcttcatgctggaaaactgagcttaaaaca 564
Query: 365 gtttcctggttaaagtaggagactgtaaaagagctcttcaggtgagcacgcaggtgctct 424
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 565 gtttcctggttaaagtaggagactgtaaaagagctcttcaggtgagcgcgcaggtgctct 624
Query: 425 tggccttctagttgtcactccctgtaccatctgctccaggaagtcactgcttctcaaaat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tggccttctagttgtcactccctgtaccatctgctccaggaagtcactgcttctcaaaat 684
Query: 485 caactgtatttattcagggtataagacaaatctactggcatcttgttaaaagatgattga 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 caactgtatttattcagggtataagacaaatctactggcatcttgttaaaagatgattga 744
Query: 545 gtggcaccagcagcatgaacctagggcccctctgcatcctggactttctgtgatgcgtac 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gtggcaccagcagcatgaacctagggcccctctgcatcctggactttctgtgatgcgtac 804
Query: 605 acccctggcctatggc 620
||||||||| ||||||
Sbjct: 805 acccctggcttatggc 820
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space: 616100
Effective search space used: 616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no114_o15.g1 MSMg01no114_o15.g1 CHROMAT_FILE:
MSMg01no114_o15.g1 PHD_FILE: MSMg01no114_o15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:43 2005
(579 letters)
>mm_chr1_73159610_73160588
Length = 979
Score = 977 bits (505), Expect = 0.0
Identities = 555/579 (95%), Gaps = 15/579 (2%)
Strand = Plus / Minus
Query: 1 tctcagtgggccacactggcacagggttgataaggcttctccaggccttgtcagaagatt 60
|||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||
Sbjct: 570 tctcagtgggccacactggcacagggctgatgaggcttctccagaccttgtcagaagatt 511
Query: 61 gctttctgactggaccaggatcagggtccctgaagccatgaagccaccattttgttctac 120
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 510 gctttctgactgggccaggatcagggtccctgaagccatgaagccaccattttgttctgc 451
Query: 121 tgacttcctgatggcctgtcccctgcctcttgccttttgttaggcatgttcttggggact 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 cgacttcctgatggcctgtcccctgcctcttgccttttgttaggcatgttcttggggact 391
Query: 181 gcctgactgtgcgtctgttgccttttagcgttggattttatttcggtttctcataaatat 240
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 390 gcctgactgtgcgtctgttgccttttagcgctggattttatttcggtttctcataaatat 331
Query: 241 agaagtgcattggagaggagcctgccttggcaggcaggcctttggcagtcctgacagctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 agaagtgcattggagaggagcctgccttggcaggcaggcctttggcagtcctgacagctt 271
Query: 301 tgcatatctctcaagtgagttatgagtggggactggggtttcagccaccactcccttgag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tgcatatctctcaagtgagttatgagtggggactggggtttcagccaccactcccttgag 211
Query: 361 tcctgtggtcgtcccgtccccccgtccccctcccccgccacccaaagaaagtgacctttc 420
|||||||||| |||||| ||||||| ||||||||||||||| ||||||||
Sbjct: 210 tcctgtggtc-------cccccc----ccctccc--gccacccaaagaaagcgacctttc 164
Query: 421 tttaacacaaggcctgaggagaaagaggaggctacaatataacccctaagttcccccact 480
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 ttcaacacaaggcctgaggagaaagaggaggctacaatataacccctaagttcccccact 104
Query: 481 cctcataaaactcttcttaaatgacaaagagagttcgaatgtttgtttataagaattttt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 cctcataaaactcttcttaaatgacaaagagagttcgaatgtttgtttataagaattttt 44
Query: 541 tttttctggaaaagaaaatcctcagcatagcctgatcca 579
||| ||||||||||||||||||||||||||||||||||
Sbjct: 43 ttt--ctggaaaagaaaatcctcagcatagcctgatcca 7
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space: 551361
Effective search space used: 551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
