BAC Information

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BAC

Clone NameMSMg01-114P10
Chromosome6 (Build37)1 (Build37)
Map Location 100,178,965 - 100,179,611134,817,044 - 134,817,675
singlet/doubletsingletsinglet
Overlap geneRybp
Upstream geneEif4e3, Gpr27, Prok2, LOC384466, LOC626503, LOC100043703
Downstream geneShq1, LOC625221, BC049816, Ppp4r2, EG545870, LOC100043321, Pdzrn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114P10.T7 (MSMg01no114_p10.b1)MSMg01-114P10.TJ (MSMg01no114_p10.g1)
ACCAG326716AG326717
length710731
length of high quality
(start - end)
650 (43 - 692)632 (73 - 704)
definitionCHROMAT_FILE: MSMg01no114_p10.b1 PHD_FILE: MSMg01no114_p10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:47 2005CHROMAT_FILE: MSMg01no114_p10.g1 PHD_FILE: MSMg01no114_p10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:47 2005
singlet/doubletsingletsinglet
BLAST hitpluralunique
Map location.(100,178,965 - 100,179,611)(134,817,044 - 134,817,675)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTATTAGCTTCCTGCATTTACAGTTTGCCCTGCTATAGTACTCCGTAG
GTAAAAACACTAGTGTAGCTTACAAAGAGACATTAAGAGGACCAGAAATA
CTTGGTATTCAGTGGCACAGAAAGAAAGCAGATTAAAACAAAAAGCACAG
TGTTAAGGCTTGCAAGTTTCCCGTGCGTTTAGTACATGATCTTTCACACT
CGTGTGCACACACACAGCTGAGCTGACATGCTCTGCCCGAGTCATGCAGT
TGGGAAGGGGGAAAAGACATCTTGACACCCACGAGAATATTTTAATCAAA
ACCTTTCAGTTTGGATCTGGATACTTCAAAACATTGGCAGACGCTTCTGT
GAGTTTAGCTCCACTAAGATGTCTCGCCTGCCTTATTAAGACCATTCTCA
GTCTACATTTTTAAGCTGCCGTATCTTAAATTATTGAGAATTTATTAATT
GCTGACTATATAATAACCTTTGCTTGTATGTTACGGAAAATGGTTTAAGA
GCCAACATTTAGAGTGTGACAATGGAGCTGAACAGTTTCTAACGCGCAAG
CAGTTCTGTTCTTGTGTATGACTTGTAACCTTAATTTACTGTGTAAAGAT
GGTTACATTATTTCCTTAGCTTTGTTTGTTGGAGACAGATAGCGAATGCT
TGTTAAGTAN
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTTGAGGTCAGACAACTCTAACCACCC
GGGGGGCCCAAGGAAGCCCTATGGCCAAGGAGCCCACTGGCACCCTAAAA
AGCGAATGGCCTCCAGAACTGGCCAGGACTGAGCCACGTCCCTGTGCAAG
CCAACACAGGAACTCAGAGCCAACCTGAGGTTACCAGCCAGGGGTAATGC
TCCACTTAACACAGACTAGGGGTCACAAGGACCACAGTGTTTGTGTTGTC
ACCAGGCAAATCTGAGTTGGTTTCTCTGTGACATATAGTTGTCAAAGGCT
TGTTTACTTCACCTCTGTATACCTCCATTTCCTCATCTGTAAAATGGGAA
TGCTGGTAGTTCCTGCTGCAGAGGAAGGGGGCTCAAGGAGGTGAGGCCTC
AGAGTCCCCAAGATCCATCTAACCCAGAGCTGCAACTGGTAACACTGAAG
CCAGGTTTGGACCCTGGCCCTGAAAGAGAGGCCACAGCTTGAAGAGTGGC
ACTTGGACTGCACTCCCACACTGCTACCTGGGGCCCAAGGCTGGGAGACC
AGGCAGTCACAGTAGGGATCCCCTCCACCCATGCTTTCTCTCGAAGCTAG
ACCGGAAGCAGCAAGAGAAGGCAAAGAAACCTCTGGCGAATTCTGCCGGC
TTCTCCCAGTTTCACAGCCCCTGCGGGGACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_p10.b1 MSMg01no114_p10.b1 CHROMAT_FILE:
MSMg01no114_p10.b1 PHD_FILE: MSMg01no114_p10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:47 2005
         (650 letters)



>mm_chr6_100178762_100179811
          Length = 1050

 Score = 1251 bits (647), Expect = 0.0
 Identities = 647/647 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcctattagcttcctgcatttacagtttgccctgctatagtactccgtaggtaaa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850 ggaattcctattagcttcctgcatttacagtttgccctgctatagtactccgtaggtaaa 791

                                                                       
Query: 64  aacactagtgtagcttacaaagagacattaagaggaccagaaatacttggtattcagtgg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 aacactagtgtagcttacaaagagacattaagaggaccagaaatacttggtattcagtgg 731

                                                                       
Query: 124 cacagaaagaaagcagattaaaacaaaaagcacagtgttaaggcttgcaagtttcccgtg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 cacagaaagaaagcagattaaaacaaaaagcacagtgttaaggcttgcaagtttcccgtg 671

                                                                       
Query: 184 cgtttagtacatgatctttcacactcgtgtgcacacacacagctgagctgacatgctctg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 cgtttagtacatgatctttcacactcgtgtgcacacacacagctgagctgacatgctctg 611

                                                                       
Query: 244 cccgagtcatgcagttgggaagggggaaaagacatcttgacacccacgagaatattttaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 cccgagtcatgcagttgggaagggggaaaagacatcttgacacccacgagaatattttaa 551

                                                                       
Query: 304 tcaaaacctttcagtttggatctggatacttcaaaacattggcagacgcttctgtgagtt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 tcaaaacctttcagtttggatctggatacttcaaaacattggcagacgcttctgtgagtt 491

                                                                       
Query: 364 tagctccactaagatgtctcgcctgccttattaagaccattctcagtctacatttttaag 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 tagctccactaagatgtctcgcctgccttattaagaccattctcagtctacatttttaag 431

                                                                       
Query: 424 ctgccgtatcttaaattattgagaatttattaattgctgactatataataacctttgctt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ctgccgtatcttaaattattgagaatttattaattgctgactatataataacctttgctt 371

                                                                       
Query: 484 gtatgttacggaaaatggtttaagagccaacatttagagtgtgacaatggagctgaacag 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 gtatgttacggaaaatggtttaagagccaacatttagagtgtgacaatggagctgaacag 311

                                                                       
Query: 544 tttctaacgcgcaagcagttctgttcttgtgtatgacttgtaaccttaatttactgtgta 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tttctaacgcgcaagcagttctgttcttgtgtatgacttgtaaccttaatttactgtgta 251

                                                          
Query: 604 aagatggttacattatttccttagctttgtttgttggagacagatag 650
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 aagatggttacattatttccttagctttgtttgttggagacagatag 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space:   665600
Effective search space used:   665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no114_p10.g1 MSMg01no114_p10.g1 CHROMAT_FILE:
MSMg01no114_p10.g1 PHD_FILE: MSMg01no114_p10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:47 2005
         (632 letters)



>mm_chr1_134816844_134817875
          Length = 1032

 Score = 1152 bits (596), Expect = 0.0
 Identities = 623/632 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttgaggtcagacaactctaaccacccggggggcccaaggaagccctatggccaaggag 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 tcttgaggtcagacaactctaaccaccaggggggcccaaggaagccctatggccaaggag 260

                                                                       
Query: 61  cccactggcaccctaaaaagcgaatggcctccagaactggccaggactgagccacgtccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccactggcaccctaaaaagcgaatggcctccagaactggccaggactgagccacgtccc 320

                                                                       
Query: 121 tgtgcaagccaacacaggaactcagagccaacctgaggttaccagccaggggtaatgctc 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 321 tgtgcaagccaacacaggaactcagagccagcctgaggttaccagccaggggtaatgatc 380

                                                                       
Query: 181 cacttaacacagactaggggtcacaaggaccacagtgtttgtgttgtcaccaggcaaatc 240
           ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||
Sbjct: 381 cacttaacacagactaggggtcacaaggaccacagtgtccgtgttgtcaccaggcaaatc 440

                                                                       
Query: 241 tgagttggtttctctgtgacatatagttgtcaaaggcttgtttacttcacctctgtatac 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgagttggcttctctgtgacatatagttgtcaaaggcttgtttacttcacctctgtatac 500

                                                                       
Query: 301 ctccatttcctcatctgtaaaatgggaatgctggtagttcctgctgcagaggaagggggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctccatttcctcatctgtaaaatgggaatgctggtagttcctgctgcagaggaagggggc 560

                                                                       
Query: 361 tcaaggaggtgaggcctcagagtccccaagatccatctaacccagagctgcaactggtaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcaaggaggtgaggcctcagagtccccaagatccatctaacccagagctgcaactggtaa 620

                                                                       
Query: 421 cactgaagccaggtttggaccctggccctgaaagagaggccacagcttgaagagtggcac 480
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cactgaagccaggtttggacactggccctgaaagagaggccacagcttgaagagtggcac 680

                                                                       
Query: 481 ttggactgcactcccacactgctacctggggcccaaggctgggagaccaggcagtcacag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttggactgcactcccacactgctacctggggcccaaggctgggagaccaggcagtcacag 740

                                                                       
Query: 541 tagggatcccctccacccatgctttctctcgaagctagaccggaagcagcaagagaaggc 600
           |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 741 tagggatcccctccacccatgctttctctctaagctagaccggaagcagcaagggaaggc 800

                                           
Query: 601 aaagaaacctctggcgaattctgccggcttct 632
           ||||||||||||||||||||||||||||||||
Sbjct: 801 aaagaaacctctggcgaattctgccggcttct 832


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space:   635684
Effective search space used:   635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)