BAC Information

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BAC

Clone NameMSMg01-115C19
Chromosome1 (Build37)
Map Location 89,594,427 - 89,594,929
singlet/doubletsinglet
Overlap geneInpp5d
Upstream gene4930429A22Rik, EG620213, LOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2
Downstream geneAtg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1, Arl4c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-115C19.T7 (MSMg01no115_c19.b1)MSMg01-115C19.TJ (MSMg01no115_c19.g1)
ACCAG326870AG326871
length1,084713
length of high quality
(start - end)
---513 (81 - 593)
definitionCHROMAT_FILE: MSMg01no115_c19.b1 PHD_FILE: MSMg01no115_c19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:03 2005CHROMAT_FILE: MSMg01no115_c19.g1 PHD_FILE: MSMg01no115_c19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGCTGACTTTGGGTTATGGGGGCATGTAGTGATATTATAGACGAAGGATG
TGAGCGACCGATGAAACGAATACCGCCCGTCGGGAACGCGTTGGCTCGCT
TATGGCAGCAGTAACAATAAATGAGGAACGGTTTACGCAAGTGGATCAAT
ATCTTTGAAGCGACTGTAAATAATACACGGCGAACTGGAAGAAGGGAGAC
GACCCACATCGTAGGTGTTTATCTTTCCCTCGACATAGCGCTTATTCACC
CCCTCCAACCTTGACCCCCTCGTTGAATCTCCATTGCCCCCCGCCGCCTT
CCGAACTTAACCCACGATATAACCCTTATTTTATATGCGCCGCCCGACGA
TATGCTGATATTACACGATTCCCTTGTGTTTGCGTGACCTGCACAATGAC
ACCCACTTCTTTTATGCGCTGATTGCGGGCAATACTTAACGCAAGCCACG
GGGGATACGGTATCGGAACACGAGACCGCTTATAACCAATTCTACACGCT
TATTACCCTTATACCAATACCGTCGAAATCGTTTTTTCGTTACCCTTACC
CTCCGTGCCCCCCTTCATCGCACCCTATCATGTTTTGTGCGGACCCCATT
ACCCGATTTGATTCTTATAGACTGTACGCTCCGCGCGAACATAAGTCGTC
CGTTGGTTCCCCGACGTACCCGGCCCACATTTTTTACGCTACGACCGCAA
TGGCATCGCGCGAATAAACGAACGCCGCAAATTCTCACGTAATAAATATA
GTATTTTATTCGCGCCTCCGCCCCTACTAACCATACCGCCTGACTCGGAA
TATATCGCGGGGCCGAATAACGCGCGCCCCTTTTCTTTCCGGCCGCTTTT
TTTCCGCATTGGTTTTTCCGTCCCGTATATATCGCTTAACGGCGGCCAGC
ATAATGGGATATTAATAGCGCCGTTATTTATCCGCCCTCAAATGCACAGT
TTCGGCATGTGATCTATTTAGCCCCTCCGCGCCTATCTGAACAACGTTTT
TCGTATTTACACCGCCCGGAATATACCGCGGGGATGAACAAGGTGGATAA
TCGTAGGCGCCCATATATATAGGCGGGTTATTTG
CCTTTCCTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGGCAGCCAGGGCTATACA
GAGAAAAAAACCAAAAAGAAAAAAAAAGAAAAGAAAAAGAATAATATTTA
CTTCCTAGATGCATTTTCAGTCCCAGTTCTCATCTCTGAGGTGCTTTGTC
TCATTTCTAGGCATTGTTGGAAGTTCCCCCTGAAAGCTAGGAAATACAGA
CAGGGTGTCTTACTCCCAGGGTGGAACCGGGGTGCATGTTCAGGGTTCCA
AAGGTGTACCTCAGTCCTGTGTTGCAACACCATCTCCCACCACCACCACC
AGGTTGCCATCCACACCCTCTGGAACATTCGCATAGTGGTGCTTGCCAAG
CCAGAGCATGAGAATCGGATCAGCCATATCTGCACTGACAACGTGAAGAC
AGGCATCGCCAACACCCTGGGTGAGCATAGAGGGAAAGCCATTCCTGTGC
ATGCTCTCCTCTTCCTCCTTTTGGCAATGTCCCAGGATAAACCATGAGAG
TCCTGTCTTGGGATCCCTTCGTCTCTAGCAAATCCAGATGGTTTTCCTTG
CTAAAACTCATCCAGGGTCTTATCCAGCTCTGGCAATCTGGCTAAAATGC
GGGTTCTGTCTCAGTAAGTCTCAAATGGTTTCCATTCTGGCAAGCCTTCC
TGTGACATAATGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no115_c19.g1 MSMg01no115_c19.g1 CHROMAT_FILE:
MSMg01no115_c19.g1 PHD_FILE: MSMg01no115_c19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:03 2005
         (513 letters)



>mm_chr1_89594216_89595129
          Length = 914

 Score =  897 bits (464), Expect = 0.0
 Identities = 497/514 (96%), Gaps = 12/514 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   agggcagccagggctatacagagaaaaaaaccaaaaagaaaaaaaaagaaaagaaaaaga 60
           ||||||||||||||||||||||||||||| ||||||||||||          ||||||||
Sbjct: 212 agggcagccagggctatacagagaaaaaa-ccaaaaagaaaa----------gaaaaaga 260

                                                                       
Query: 61  ataatatttacttcctagatgcattttcagtcccagttctcatctctgaggtgctttgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataatatttacttcctagatgcattttcagtcccagttctcatctctgaggtgctttgtc 320

                                                                       
Query: 121 tcatttctaggcattgttggaagttccccctgaaagctaggaaatacagacagggtgtct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcatttctaggcattgttggaagttccccctgaaagctaggaaatacagacagggtgtct 380

                                                                       
Query: 181 tactcccagggtggaaccggggtgcatgttcagggttccaaaggtgtacctcagtcctgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tactcccagggtggaaccggggtgcatgttcagggttccaaaggtgtacctcagtcctgt 440

                                                                       
Query: 241 gttgcaacaccatctcccaccaccaccaccaggttgccatccacaccctctggaacattc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttgcaacaccatctcccaccaccaccaccaggttgccatccacaccctctggaacattc 500

                                                                       
Query: 301 gcatagtggtgcttgccaagccagagcatgagaatcggatcagccatatctgcactgaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcatagtggtgcttgccaagccagagcatgagaatcggatcagccatatctgcactgaca 560

                                                                       
Query: 361 acgtgaagacaggcatcgccaacaccctgggtgagcatagagggaaagccattcctgtgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acgtgaagacaggcatcgccaacaccctgggtgagcatagagggaaagccattcctgtgc 620

                                                                       
Query: 421 atgctc-tcctcttcctccttttggcaatgtcccaggataaaccatgagagtcctgtctt 479
           |||||| ||||| ||||||||||||||||||||||||||||||  ||||||||||||| |
Sbjct: 621 atgctcctcctcctcctccttttggcaatgtcccaggataaactgtgagagtcctgtcct 680

                                             
Query: 480 gggatcccttcgtctctagcaaatccagatggtt 513
           ||||||||||||||||||||||||||||| ||||
Sbjct: 681 gggatcccttcgtctctagcaaatccagaaggtt 714


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 914
Length adjustment: 10
Effective length of query: 503
Effective length of database: 904
Effective search space:   454712
Effective search space used:   454712
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)