BAC Information

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BAC

Clone NameMSMg01-115D23
Chromosome1 (Build37)
Map Location 41,322,541 - 41,323,023
singlet/doubletsinglet
Overlap genenone
Upstream geneIl1r1, Il1rl2, Il1rl1, Il18r1, Il18rap, Slc9a4, Slc9a2, Mfsd9, Tmem182, Ppia-ps1_352.1
Downstream geneLOC100041441, LOC383634, LOC666582
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-115D23.T7 (MSMg01no115_d23.b1)MSMg01-115D23.TJ (MSMg01no115_d23.g1)
ACCAG326925AG326926
length1,433717
length of high quality
(start - end)
---582 (76 - 657)
definitionCHROMAT_FILE: MSMg01no115_d23.b1 PHD_FILE: MSMg01no115_d23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:09 2005CHROMAT_FILE: MSMg01no115_d23.g1 PHD_FILE: MSMg01no115_d23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGCCCGCTCTACCCGCGGATATTTGTCCTCTCCACCCCCTCATAACTCGT
CTTTTACCTGTCGACACCCCCCGGACACGACAACCTCGCCCACCTCTTTA
TCCCTCCCGTATTGCACACCTTATTATGCCTTTTAGCCTACGCCGTCTAT
ATATCACTCCCTAATAATATTCCCCCCGAGTCTTGTCCGTCCCATCCGTA
TTCGCGGAATGCTTATATATTTATTTAGGAGGGCACCGACACCCAACTAT
GCCTAATACGGGCCTAAACAAAGTGGCGCGCGGCCGCATATATCACCGGT
CCTCCTCAATATAGGACACCCAATATATATACCGCGCCACCTCCCGCGCA
TAACCCGCGGTAACATACCCCGCCACATATAAGGCCGGTAACAAGCTTAC
AGCATGTGCACGCATTACGCCGCAACGCCCAATCCCAACACCGATAATCT
GCTCTTCTGTAATTATGTAGTCCGCCCGTACGTATATATCCCTTACACGC
CTCTTCGCACCACTCAATTCAATAAAATATGTTGCATTTCTATCTCCACG
CCTAATATGTGTTTATTCATAAACTCCGGACGCGAATTTATCGCCGATTG
ATAACCCGCTATTGTGGCCTCGCGGCTTTTATATTTCTCCGTAACTCCCT
TTCCCTCGCTTCGGCCCCCGTTAATTTATAACAAGATCACGAGGTTACTG
CGATTGCGCGGTCACGGAATGGACGTGTAAACACTATTAAAGCCATACCG
CGGTACGGGTACTACACGTTAACACTTATCGCCTTTATTCCCCTAATACA
ATCTCTCCGTCTTTTTGTTCTCTCATATACTGTGGGTCTTAAACACACAC
CTACACGCGGCGCGAATCGTATATCACCCCATAGAGAGCGCGGCACGAGA
TAACCACCCGCGGTAAATATTATACACACCACCTGCTCGGACACCACTCG
GTGGTCCTACAAGGTTAAGAACCGGTTCGATGCGNTTACTACTGTAGCGG
CGCGATACCAGTTATCGCCCACATAGAATAATCCGCCGCGGTAATATTAT
CGCAATCTATGAACACGCGACGGCCCGCGGTACAAGTGGCGTAGCGCGCG
TATCAACCGTCGATTGTGCTAGTTCTGGTTATATATTCGTTATAAAACCG
CCGTCTCACGACCGCCCTATCTCGTCTCTGCATTAATTCACGTCCGTCGC
GACACACGTTCCCACACGTTGTGAGTTTACACATCACACAAGTGCCGACA
TTACTCACAGTGTGATTTGATCNGCGCGCTACAGCTCCCGGCGTGTCTCG
ACCGATCTCCGACATATGTACACGAGCCGCGAGCGCATATCTAATAGACG
GACGCCGCGAATATTAATGGGCGCGGACATATGTGTATAAGAGCGCGCCG
GCGATATATGATTCGACGCGACGGACGACCACA
NTTTTCCATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAATGACCCTTGTCGACATGTGCTAT
TGCTGTTTATGTTCTTAAAAGAATTGATTGATTGATTGATTGATTGATTG
ATTGTGTGTCTATGAACACACATAAATCAATGCACTCTTTGCATGCCTAA
TTCTCAAGGAACCCAGAAAAGAACATCAGGCCCCCGAAACAAAAGATACA
GGAGATTGTGAGCCACCATATGTGTACTGGGAACTGAACCGGAGTCCTCT
ACAAGTTATGGAAAGCAAGCACTCATATCCATTGAGCCTGCTCTCCAGCC
CCATTGGTCTATTTAGATGACACTGTTCTATAACCAAGCTCATTCCCAAA
GGCTGGAAAATAGCTCCATCTGGCACCTCCTCATCAACTCCCTACAATTA
CCTCTAGGAGCTTAACAACCAATGGGATTGCTGCCTGCCACCCAGGTTCC
CCATCTCTTGCTACTCTACTCCTACTATCTTGATATATTCCTAATTATAT
TTTAGTTCAATCGTGACGTGTGATATATCAATATCATAGAGCCCAAACTA
AGCTGCACAGTTTATAGACCTGTTTTCTCTACCTTTCTTACCTATTCTGA
TTCTTTGATTTGAACTTGCGATTTTCATTTCATTCATCGCTAGCCTCACC
CTATTGCTAAATACCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no115_d23.g1 MSMg01no115_d23.g1 CHROMAT_FILE:
MSMg01no115_d23.g1 PHD_FILE: MSMg01no115_d23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:09 2005
         (582 letters)



>mm_chr1_41322042_41323023
          Length = 982

 Score =  820 bits (424), Expect = 0.0
 Identities = 467/484 (96%), Gaps = 8/484 (1%)
 Strand = Plus / Minus

                                                                       
Query: 106 tgcactctttgcatgcctaattctcaaggaacccagaaaagaacatcaggcccccgaaac 165
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 982 tgcactctttgcatgcctaattctcaaggaacccagaaaagaacatcaggcccctgaaac 923

                                                                       
Query: 166 aaaagatacaggagattgtgagccaccatatgtgtactgggaactgaaccggagtcctct 225
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 922 aaaagatacaggagattgtgagccaccatatgtgtactgggaactgaacc-gagtcctct 864

                                                                       
Query: 226 acaagttatggaaagcaagcactcatatccattgagcctgctctccagccccattggtct 285
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 acaagttatggaaagcaagcactcatatccattgagcctgctctccagccccattggtct 804

                                                                       
Query: 286 atttagatg----aca-ct--gttctataaccaagctcattcccaaaggctggaaaatag 338
           |||||||||    | | ||  ||||||||||||||||||||||||||||||||| |||||
Sbjct: 803 atttagatggtctatagcttggttctataaccaagctcattcccaaaggctggagaatag 744

                                                                       
Query: 339 ctccatctggcacctcctcatcaactccctacaattacctctaggagcttaacaaccaat 398
            |  |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ttttatctggcacctcttcatcaactccctacaattacctctaggagcttaacaaccaat 684

                                                                       
Query: 399 gggattgctgcctgccacccaggttccccatctcttgctactctactcctactatcttga 458
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gggattgctgcctgccacccaggttccccatctcttgctactctactcctactatcttga 624

                                                                       
Query: 459 tatattcctaattatattttagttcaatcgtgacgtgtgatatatcaatatcatagagcc 518
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tatattcctaattatattttagttcaatcgtgacgtgtgatatatcaatatcatagagcc 564

                                                                       
Query: 519 caaactaagctgcacagtttatagacctgttttctctacctttcttacctattctgattc 578
           |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 563 caaactaagctgcatagtttatagacctgttttctctacctttcttgcctattctgattc 504

               
Query: 579 tttg 582
           ||||
Sbjct: 503 tttg 500


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space:   555984
Effective search space used:   555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)