Query= MSMg01no115_e17.b1 MSMg01no115_e17.b1 CHROMAT_FILE:
MSMg01no115_e17.b1 PHD_FILE: MSMg01no115_e17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:12 2005
(585 letters)
>mm_chr1_42135486_42136469
Length = 984
Score = 1046 bits (541), Expect = 0.0
Identities = 571/581 (98%), Gaps = 1/581 (0%)
Strand = Plus / Plus
Query: 5 gaattctgtgttctggagttacagtagtttattagttgcctgacaggaatcctggaaact 64
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgtgtcctggagttacagtagtttattagttgcctgacaggaatcctggaaact 264
Query: 65 aaattctgaacttctctgtaagagcattaggtatttttaacctaggggccatctctggtt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaattctgaacttctctgtaagagcattaggtatttttaacctaggggccatctctggtt 324
Query: 125 aaaaatacattacacttaaaattggttacaaatacattacattaaacggtaccaggctat 184
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 325 aaaaatacattacacttaaaattggttacaaatacattacattaaactgtaccaggctat 384
Query: 185 agtgtagtcgttatcagacaatgatataaataatcagaaaagaaactctgctttttagtt 244
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 385 agtgtagtcgttatcagacaatgatataaataatcagaaaagaaactcttatttttattt 444
Query: 245 ttgctgtgaaagggccaggttttattctgactcacattataatgaagatgagactaaggg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttgctgtgaaagggccaggttttattctgactcacattataatgaagatgagactaaggg 504
Query: 305 cagctccctgagccaacaggccactgagcttcagttcacaaccaattcccgtacccttct 364
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 505 cagctccctgaaccaacaggccactgagcttcagttcacaaccaattcccatacccttct 564
Query: 365 ctgagaggccttctgtcagcaaacagcttgacacaatcctaacactgcttcgaagaagaa 424
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 565 ctgagaggccttctgtcagcaaacagcttaacacaatcctaacactgcttcgaagaagaa 624
Query: 425 ggctcagccttccattgtctctcaaatctgctttttaaaaatcagcctactgctgcagcc 484
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 625 ggctcagccttccattgtctctcaaatctgctttttaaaa-tcagcctactgctgcagcc 683
Query: 485 aagcatgataactaagaaatgtagaaggaataatttgagcatgtgctctctcagagactg 544
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 684 aagcatgataactaagaaatgtagaaggaataatttgagcatgcgctctctcagagactg 743
Query: 545 gaatgatggtggtcatcatgggaactgagcacagacactca 585
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gaatgatggtggtcatcatgggaactgagcacagacactca 784
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 984
Length adjustment: 10
Effective length of query: 575
Effective length of database: 974
Effective search space: 560050
Effective search space used: 560050
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no115_e17.g1 MSMg01no115_e17.g1 CHROMAT_FILE:
MSMg01no115_e17.g1 PHD_FILE: MSMg01no115_e17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:12 2005
(642 letters)
>mm_chr1_42254268_42255310
Length = 1043
Score = 1189 bits (615), Expect = 0.0
Identities = 636/643 (98%), Gaps = 1/643 (0%)
Strand = Plus / Minus
Query: 1 attttccaaaacacatatttcaatttagtcattatgtgctagtgtttgt-aaaaagcttt 59
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 843 attttccaaaacacatatttcaatttagtcattatgtgctagtgtttgtaaaaaagcttt 784
Query: 60 atgttttctgctcctttcctgatagctcccataagaagaaatattcacattatctaatga 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 atgttttctgctcctttcctgatagctcccataagaagaaatattcacattatctaatga 724
Query: 120 ccacaatgctgtttatgtggaactctttctttttcttctcatggaatcatttcaactttg 179
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 ccacaatgctgttgatgtggaactctttctttttcttctcatggaatcatttcaactttg 664
Query: 180 aaagtctccagagattactggtaatgattccaggcattctaatttttttaattctattta 239
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 aaagtcttcagagattactggtaatgattccaggcattctaatttttttaattctattta 604
Query: 240 aaatgatttttgtcatactgattattcttgttggatgataaataaagatatatccttttc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 aaatgatttttgtcatactgattattcttgttggatgataaataaagatatatccttttc 544
Query: 300 tgatttcagatgaaaacaaggaaaagaatcaaaagagcctgtccacacagtatggagtag 359
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 543 tgatttcagatgaaaacaaggaaaagaatcaaaagagcctgtccatagagtatggagtag 484
Query: 360 ttaggaagcatcgcaatctgccatgttaattaaattaataaggctaatgactcctaatga 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ttaggaagcatcgcaatctgccatgttaattaaattaataaggctaatgactcctaatga 424
Query: 420 tgggctgcctgctgtggtgtgtggagaaatacagaatgacattcccttccttgaaaacat 479
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 423 tgggctgcctgctgtggtgtgtggagaaatacagaatgacattcccctccttgaaaacat 364
Query: 480 tcaccattgcctcccctgcacatatatttgtgatagcgcaaccaacttggaacaaagaga 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tcaccattgcctcccctgcacatatatttgtgatagcgcaaccaacttggaacaaagaga 304
Query: 540 gtttgtgtgcatttccacaaactctactgctaaaggcaaaggctgcattggaagcaactg 599
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 303 gtttgtgtgcatttccacaaactctactgctaaaggcaaaggccgcattggaagcaactg 244
Query: 600 atgctgccaagtcactcatgtggttggaaggaaccctcatggt 642
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 atgctgccaagtcactcatgtggttggaaggaaccctcatggt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1043
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1033
Effective search space: 652856
Effective search space used: 652856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
