XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTG
CAAACTACAGTAATGGTCAGCTTGCCAAAGATATGTCCACTGGTACAATA
GTGTCAAATGTCATGAGAGTAATAAACTACTCTAAAAAAACAAAAACAAA
CAAACAACAAAAACAATGAACCACCATTTAAACACCATATAATGGCACCC
ACACGTGGCAATATTATTGGGATTAAGAAGATGTGTTTAAAGTGGTTCTA
CTTTCTAGAGGAGGACCTACTATTATACTGCTGAACTGGTATGATATTAA
ACCAACTCCTAAATACCTTAGCCATTATTAAAAATTAAGGCAAAGCAAAC
CCCACAAAACTTAGTAACAGAAGCATCCAGTATTAATATATCCATCTTTT
TATGGTTTAGCGATTAGATTTTCTTCAAGCCAGCTTTCCAAACTTCAGAC
GACATGCAAGAATAAACATGACAGTTACTCAAGTACAGAAGCAATCAGAG
AGCTTTGTACTTCATTTGGAGGCAGAGGCCACTGTACACCTTCCTCCCAC
TTCTCTCAGGGTGATTAGCAGTGTCCACAGTATAGTCTTTGTCTCTCAAG
TGTTGTTTGTCTACTTGCTCTAATGTACAGAGTAAAGGATTTACTTTTCA
GCTCTTCCCAGACCATATTGAATCACAAAACTTGACATTTGTAAAGCATT
TTCTCCTTTCAGAATAAAGAAAAAAG

NTTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCATATAAAATTATATTTCATGAT
GCGGGTAGAGGATTTTAAGAAGGGCATTAATAACTCACTTAAGGAAATAC
AGGAGAACACTGATAAAACAGGTAGAAGACATTAAAGGGGAAGCACAAAA
ATCCCTTAAAGAATTGCAGGAAAACACAACCAAACAGGTGATGGAAGTGA
ATAAAACCATCCAAGACCTAAAAATGGAAGTAAACACGATAAAGAAAACC
CAAAGTGAGGCGATGCTGGAGATAGAAACCCTAGGAAAGAAATCAAGAAC
CATAGATACGAGCATCAGCAACAGAATACAAGAGATGTAAGAGAGAATCT
CAGGTACAGAAGATTCTATAGAGAACATCGGCACAACAATCTAAGAAAAT
TCAAAACGCAAAAAGATCCTAACTCAAAACATCCAGGAAATCCAGGACAC
AATGAGAAGACCAAACCTACAGATAATAGGAGTAGATGAGAATGAAGATT
TTCAACTCAAAGGGCCAGCAAATATCTTCAACAAAATTATAGAAGAAAAC
TTCCCTAACCTAAAGAAAGAGATGCCCATGAACATACAAGAAGCCTACAG
AACTCCAAATAGACTAGACCAGAANATAAATTCCTCCTGACACATAATAA
TCAGAACAACAAATGCACTATATAAAGATAGA

Query= MSMg01no115_g05.b1 MSMg01no115_g05.b1 CHROMAT_FILE:
MSMg01no115_g05.b1 PHD_FILE: MSMg01no115_g05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:19 2005
         (532 letters)



>mm_chr1_24834427_24835358
          Length = 932

 Score = 1002 bits (518), Expect = 0.0
 Identities = 527/530 (99%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattctgcaaactacagtaatggtcagcttgccaaagatatgtccactggtacaatagt 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattctgcaaactacagtaatggtcagcttgccaaagatatgtccactggtacaatagt 262

                                                                       
Query: 63  gtcaaatgtcatgagagtaataaactactctaaaaaaacaaaaacaaacaaacaacaaaa 122
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 263 gtcaaatgtcatgagagtaataaactactctaaaaaaataaaaacaaacaaacaacaaaa 322

                                                                       
Query: 123 acaatgaaccaccatttaaacaccatataatggcacccacacgtggcaatattattggga 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 acaatgaaccaccatttaaacaccatataatggcacccacacgtggcaatattattggga 382

                                                                       
Query: 183 ttaagaagatgtgtttaaagtggttctactttctagaggaggacctactattatactgct 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ttaagaagatgtgtttaaagtggttctactttctagaggaggacctactattatactgct 442

                                                                       
Query: 243 gaactggtatgatattaaaccaactcctaaataccttagccattattaaaaattaaggca 302
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 443 gaactggtatgatattaaaccaactcctaaataccttagccattattaaaaattaaggta 502

                                                                       
Query: 303 aagcaaaccccacaaaacttagtaacagaagcatccagtattaatatatccatcttttta 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aagcaaaccccacaaaacttagtaacagaagcatccagtattaatatatccatcttttta 562

                                                                       
Query: 363 tggtttagcgattagattttcttcaagccagctttccaaacttcagacgacatgcaagaa 422
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tggtttagtgattagattttcttcaagccagctttccaaacttcagacgacatgcaagaa 622

                                                                       
Query: 423 taaacatgacagttactcaagtacagaagcaatcagagagctttgtacttcatttggagg 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 taaacatgacagttactcaagtacagaagcaatcagagagctttgtacttcatttggagg 682

                                                             
Query: 483 cagaggccactgtacaccttcctcccacttctctcagggtgattagcagt 532
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 cagaggccactgtacaccttcctcccacttctctcagggtgattagcagt 732


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space:   481284
Effective search space used:   481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)