BAC Information

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BAC

Clone NameMSMg01-116B21
Chromosome1 (Build37)
Map Location 62,212,372 - 62,212,929
singlet/doubletsinglet
Overlap genePard3b
Upstream geneLOC100042566
Downstream geneLOC667592, Nrp2, LOC100043070, A430093A21Rik, Ndufs1, Eef1b2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-116B21.T7 (MSMg01no116_b21.b1)MSMg01-116B21.TJ (MSMg01no116_b21.g1)
ACCAG327577AG327578
length697752
length of high quality
(start - end)
555 (51 - 605)476 (135 - 610)
definitionCHROMAT_FILE: MSMg01no116_b21.b1 PHD_FILE: MSMg01no116_b21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:16 2005CHROMAT_FILE: MSMg01no116_b21.g1 PHD_FILE: MSMg01no116_b21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAACTAAAAATCTATAATTTGCGGCGCTAAACGACTCCTATTCAGAGAGG
ATCCGCGGAATTCACCAAATCCATATACTTCCCGAGTAATTTGCCATATG
ATAAGTAATTCACTTCTGCCCAGTGTATTGCAAACCACTTCATACCTATT
TGAGGAGTTAATTCCTGGCATTTCTCAGTCTCATTTTTTTTTCTTTTGTA
AAAATGTGATGACTTAGGGAAAAAATGAGAATGTAAAATAATTTACTGAG
TGAATTTGTCTAGTATCAAAATTAGGATAGCCATTTTATTATTGAAAATG
TCTGTGTTTCCCATGTGTTTAGTATTACATTCTTAGAGCTTCATTGCATT
TATTGCACACTTAATCCACAACATAGGTCGTTAAAAAAAAAAACACTTAG
GAGCTGAGCTGTGCCTAGTAACACATGTTTACCATACCAGCACTCAAGAG
CTCTGCCAGAAATATCTGAGTTCAGGGACAGCCATGGCAGCACAGCAATA
CCCTGGCTTACTTAGCAATCAATACCTGTCTCCCATCAGCAGGGGGAAAG
GGGTGATAGGAAATGTTCTAAGCTGTGGTTGTGTATATGATTCTACTCAT
TAGGTAAATTGGCAGAGATGTTACAGGAAGAACCCAAGAAGAACTCGTGG
TCATGCTAAGGAGCACCAAGCAGGGAGAGACAGTGTCATTGGTCATN
TTTTTTTTTTTTNTTTTNCTTTTTTTTTCTCTTTCTTCTNNNCCCCCCCA
CACCNNNNCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAGTCATCAGGCTCT
GATAGCAAATGCCTTTACTCACTGAGCCAACCAATTTCTTAGGCACATAT
ATGTCTCCTATATACAGGTTGTCCTGGCTAGTTTTGTGTCAACTTGACAC
AGCTGGAGTTATCACAGAGAAAGGAGCTTCAGTTGAGGAAGTGCCTCCAT
GAGATCCAACTGTAAGGCATTTTCTCAATTAGTGATCAAGGGGGAAAGGC
CCTTTGTGGGTGGGACCTTCTCTGGGCTGGTAGTCTTGGTTCTATAAGAG
AGCAGGCTGAGCAAGCCAGTTGAAGCAAGCCAGTAAAGAACATCCCTCCA
TGGCCTCTGCATCAGCTCCTGCTCCCTGACCTGCTTGAGTTCCAGTCCTG
ACTTCTTTCAGTGATGAACAGCAACGTGGAAGTGTAAGCGGAATAAACCC
TTTCCTCCCCAGCTTGCTTCCTGGTCATGATGTTTGTGCCGGGATAGAAA
TCCTGACTGAGACACCGGTTAAGTGTTCATAAACTAGGAGTGCTTCAGAA
TTCAAACACTTTTGACTTTTAAACAATTTGCAAAAACATGACAGGCGTTT
CTTGTGGATGAGACACCAGTGTATGCAAAGATCAACTCATGTCCTCATAC
AT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no116_b21.b1 MSMg01no116_b21.b1 CHROMAT_FILE:
MSMg01no116_b21.b1 PHD_FILE: MSMg01no116_b21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:16 2005
         (555 letters)



>mm_chr1_62212166_62213122
          Length = 957

 Score =  994 bits (514), Expect = 0.0
 Identities = 544/560 (97%), Gaps = 13/560 (2%)
 Strand = Plus / Plus

                                                                       
Query: 7   ggaattcaccaa---atccatatacttcccgagtaatttgccatatgataagtaattcac 63
           ||||||||||||   ||  |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 207 ggaattcaccaaaacat--atatacttccagagtaatttgccatatgataagtaattcac 264

                                                                       
Query: 64  ttctgcccagtgtattgcaaaccacttcatacctatttgaggagttaattcctggcattt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttctgcccagtgtattgcaaaccacttcatacctatttgaggagttaattcctggcattt 324

                                                                       
Query: 124 ctcagtctca-tttttttttcttttgtaaaaatgtgatgacttagggaaaaaatgagaat 182
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctcagtctcattttttttttcttttgtaaaaatgtgatgacttagggaaaaaatgagaat 384

                                                                       
Query: 183 gtaaaataatttactgagtgaatttgtctagtatcaaaattaggatagccattttattat 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtaaaataatttactgagtgaatttgtctagtatcaaaattaggatagccattttattat 444

                                                                       
Query: 243 tgaaaatgtctgtgtttcccatgtgtttagtattacattcttagagcttcattgcattta 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgaaaatgtctgtgtttcccatgtgtttagtattacattcttagagcttcattgcattta 504

                                                                       
Query: 303 ttgcacacttaatccacaacataggtcgttaaaaaaaaaaa-------cacttaggagct 355
           |||||||||||||||||||||||||||||||||||||||||       ||||||||||||
Sbjct: 505 ttgcacacttaatccacaacataggtcgttaaaaaaaaaaaaaaaaaccacttaggagct 564

                                                                       
Query: 356 gagctgtgcctagtaacacatgtttaccataccagcactcaagagctctgccagaaatat 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gagctgtgcctagtaacacatgtttaccataccagcactcaagagctctgccagaaatat 624

                                                                       
Query: 416 ctgagttcagggacagccatggcagcacagcaataccctggcttacttagcaatcaatac 475
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 625 ctgagttcagggacagccatggcagcacagcaataccctgggttacttagcaatcaatac 684

                                                                       
Query: 476 ctgtctcccatcagcagggggaaaggggtgataggaaatgttctaagctgtggttgtgta 535
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 685 ctgtctcccatcagcagggggaaaggggcgataggaaatgttctaagctgtggttgtgta 744

                               
Query: 536 tatgattctactcattaggt 555
           ||||||||||||||||||||
Sbjct: 745 tatgattctactcattaggt 764


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 957
Length adjustment: 10
Effective length of query: 545
Effective length of database: 947
Effective search space:   516115
Effective search space used:   516115
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)