BAC Information

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BAC

Clone NameMSMg01-116D17
Chromosome1 (Build37)
Map Location 72,312,262 - 72,312,600
singlet/doubletsinglet
Overlap genePecr
Upstream geneAbca12, LOC629101, Atic, Fn1, LOC100042814, Gabarapl2-ps1_652.1, LOC383528, LOC675667, EG667931, EG433319, LOC667937, LOC100043255, Mreg
Downstream geneTmem169, Xrcc5, March4, Smarcal1, Ankar, Rpl37a, Igfbp2, Igfbp5, LOC672187, LOC100042860, Tnp1, 1700027A15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-116D17.T7 (MSMg01no116_d17.b1)MSMg01-116D17.TJ (MSMg01no116_d17.g1)
ACCAG327662AG327663
length725726
length of high quality
(start - end)
343 (76 - 418)287 (80 - 366)
definitionCHROMAT_FILE: MSMg01no116_d17.b1 PHD_FILE: MSMg01no116_d17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:26 2005CHROMAT_FILE: MSMg01no116_d17.g1 PHD_FILE: MSMg01no116_d17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTATCXXXXXXXXXXXXXXXXXXXXXXXXXCTATTTCGAGAAGAGGCG
CGGAATTCTGGGGAGTCCCCAGCTGCCATGCTAAACTTCTATTCAAGCAG
CAGGTAGAGACATAAAGAGATGTGTCCTTTCAAAGTTACAGAACGAGCTG
TGTCAACATCTAGATGCAAAGGAGCTCCTAAAGACAACGAGTTATGCTAC
AAGTTAAATAGACCCAAGATCCCAGTGTTGACAGGAAGGCTCAAGTACAG
AGCACAGAAAGTTCATGACATCAGGTTCGCTCTGACTTTAAAGAAATTGT
TGGGGTTGGGGTGTAGCTGAACTGGTGGTGTGCTTGTCTAGCATGCACAA
GGCCCAAAGGCAATCTTTAACAGCAAATAAAGCAGGTATGGCAGCACCAG
CCTGTAATGCCAGCACATAGGACACCTAAGCGAGGGGATCAGAAATACAA
GTCGCTCTCTGTTACAGATCAAATTCGGGACCAGCTCAGAGACAGGAGAC
CCGGTCTCAAAAAACAAAAACAACATAAATAAATCCTTATTACAGGCTGG
ATTAAAACAAATTAGCTGGGCAGTGGTGGCAGACACCTTTAATCCCAGCA
CTTGGGAGGCAGAGACAGGCGGATTTTCTGAGTTCGAGGCCAGCCTGTTC
TATAGAGCGAGTTCCAGGTAAACCAGGACTATACAGAGAAACCCTGTCTC
AAAACAAAACCAAAACAACCCAAAT
NNTTTCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATG
GCAGAGAAGCACCTGAAAAAATGTTCACCATCCTTAATCATCAGGGAAAT
GCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGTCTA
AGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGA
GGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTG
GAAATCCGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGG
ATCCAGCAATACCTCTCTTGTGCATATATCCCCAAGATGCCCCAACTGGT
AAGAAGGACACATGCTCCACTATGTTCATAGAAACCTTATTTATAATAGC
CAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGA
AAATGTGGTACATCTATACAATGGAGTACTACTCAGCTATTAAAAAGAAT
GAATTTATGAAATTCCTAGCCACATGGATGGACCTGGAGGGCATCATCCT
GAGTGAGGTACACATTCACAAAGGAACTCACACAATATGTACTCATTGAT
AAGTGGATATAAGCCCAATACCTAGGATACCCAAGATATAAGATTACCTT
TCCTAAACACATGAAAACTCAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no116_d17.b1 MSMg01no116_d17.b1 CHROMAT_FILE:
MSMg01no116_d17.b1 PHD_FILE: MSMg01no116_d17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:26 2005
         (343 letters)



>mm_chr1_72312062_72312803
          Length = 742

 Score =  574 bits (297), Expect = e-168
 Identities = 330/341 (96%), Gaps = 3/341 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccatgctaaacttct-attcaagcagcaggtagagacataaagagatgtgtcctttcaaa 59
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccatgctaaactt-tgattcaagcagcaggtagagacataaagagatgtgtcctttcaaa 259

                                                                       
Query: 60  gttacagaacgagctgtgtcaacatctagatgcaaaggagctcctaaagacaacgagtta 119
           |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 260 gttacagaacgagctgtgtcaacatctagatgcaaaggagctcctaaagacaataagtta 319

                                                                       
Query: 120 tgctacaagttaaatagacccaagatcccagtgttgacaggaaggctcaagtacagagca 179
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 320 tgctacaagttaaatagacccaagatcccagtgt-gacaggaaggctcaagtacagagca 378

                                                                       
Query: 180 cagaaagttcatgacatcaggttcgctctgactttaaagaaattgttggggttggggtgt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cagaaagttcatgacatcaggttcgctctgactttaaagaaattgttggggttggggtgt 438

                                                                       
Query: 240 agctgaactggtggtgtgcttgtctagcatgcacaaggcccaaaggcaatctttaacagc 299
           |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 439 agctgaactggtggggtgcttgtctagcatgcacaaggcccaaaggcaatctctaacagc 498

                                                    
Query: 300 aaataaagcaggtatggcagcaccagcctgtaatgccagca 340
           ||||||||||||| |||| ||| |||||||||| |||||||
Sbjct: 499 aaataaagcaggtgtggcggcagcagcctgtaacgccagca 539


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 742
Length adjustment: 9
Effective length of query: 334
Effective length of database: 733
Effective search space:   244822
Effective search space used:   244822
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)