BAC Information

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BAC

Clone NameMSMg01-116D19
Chromosome1 (Build37)
Map Location 151,987,548 - 151,987,735
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042813, Pla2g4a, Ptgs2
Downstream geneLOC676712, LOC100043257, LOC100043261, Pdc, BC003331, Tpr, EG625534, EG545370, LOC668040
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-116D19.T7 (MSMg01no116_d19.b1)MSMg01-116D19.TJ (MSMg01no116_d19.g1)
ACCAG327666AG327667
length705713
length of high quality
(start - end)
514 (75 - 588)191 (72 - 262)
definitionCHROMAT_FILE: MSMg01no116_d19.b1 PHD_FILE: MSMg01no116_d19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:26 2005CHROMAT_FILE: MSMg01no116_d19.g1 PHD_FILE: MSMg01no116_d19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCCCCNTTATCTATAATTGCGGCGCTAATACGACTCCTATTCCGAGAGGA
CCGCGGAATTCCTAAAATGCTCAGTATTCATTAAGCTCTTTTATAGTGGG
ACTGCTATTGGGTCTCTTCTAATAGTCAAAACTGCAGTGAGAACTCTGTA
GGTCTCCCATGTGTCACCAGTTAATTCTAGATAGTAACCAAACTTTCTCC
TACTCAGAGCACATTCCAGGAGGTTGTAAAACAATCCCAGGTAATCAAAA
GCGAACTAATGATTTATTTTAGGTGCTAGAACAAAAGATAAAATATTGGC
TTGGCTTATCTATACAAAGCTTCACTAATAACTTAGTTATGATTCTAAAC
TCTCAGTGAACCTGTGGAGCTGTGACAGGCGATGAGTTAATTTTCTATTT
ATCCATTTTGCCGAAGGAGTTTATCGGCTGAAGGTGTTCTTTGGTAGAAT
TTTTGGCTTATGTATACTATCATCATCACTTATGTATACTATCATCATCT
GCGAATAGCAACATTTTGAATTTTTCTTTTCCTATTTATATTCCCTTGAT
ATCGTTTAATTGTGTTATTGCTTTAGCTAGTACTTCAAGTAGGATATTAA
ATAGATAGGGAAAGAGTGGGAAACCTTGTTTTGTCCCTGATTTTAGTGAA
ATTTCTTTAACTTTTCCTCCATTTAATTTGATGTTGTCTATTGGCTTGAT
TATAT
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTCTGGAGATCTGGGTGATGCTATGACCT
GCCACTGAGGATGAGACTCTGCCTAGAAACACTGAAATCCAAACAAGCAT
GCAAACAAAGTCCCTATTGGCAAGTGGTTATATCAACTGTCATCAAAGGT
GGGTAACTACGCGAATATTAATTCTACATCTGAAATGTACACTTATTTAT
GAACAATGTTCAAAGTGTGGGGTGTTTTTTTAAAATTAGACCTAGGAAAG
AGGGTTGGGAAGATGGATCAGCACGTAACGTGCTTGCCACACAATGCGTT
CATTTTTTCCTACTCCCACCAAGAATTAAATAATAAATTAAAAACCTAGA
AACATCCCCTACCCCCAAACAAAACCAAGGGGCATCTCTGTTGTTGCTGT
TTATCTGGCACTATGAACTTACGTAACAAACTTTTCTTCTCATGTCATGG
CTCCTGACCGCTGACCATTTATCAGTGCATACAAACCTCCTACCTATCAG
CCCAGCGATGAGCTGAACTTCACACATGGTCAGCTGACCACGCGCTTCCT
GTTCACCCCTGCCCTTAAATATAATTACAGGGTTCCATCAGTGCTGTGGT
AATAAGGGTAAAAACATCCACAACACCCTTTCCTTGTCCCTATTACCTAG
GAACACCTCAACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no116_d19.g1 MSMg01no116_d19.g1 CHROMAT_FILE:
MSMg01no116_d19.g1 PHD_FILE: MSMg01no116_d19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:26 2005
         (191 letters)



>mm_chr1_151987348_151987938
          Length = 591

 Score =  333 bits (172), Expect = 5e-96
 Identities = 184/188 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctctggagatctgggtgatgctatgacctgccactgaggatgagactctgcctagaaaca 60
           |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 201 ctctggagatctgggtgatgctatgacctgccactgagaaggagactctgcctagaaaca 260

                                                                       
Query: 61  ctgaaatccaaacaagcatgcaaacaaagtccctattggcaagtggttatatcaactgtc 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 ctgaaatccaaacaagcatgcaaacaaagtccccattggcaagtggttatatcaactgtc 320

                                                                       
Query: 121 atcaaaggtgggtaactacgcgaatattaattctacatctgaaatgtacacttatttatg 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 atcaaaggtgggtaactacgcgaatattaattctacatttgaaatgtacacttatttatg 380

                   
Query: 181 aacaatgt 188
           ||||||||
Sbjct: 381 aacaatgt 388


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 591
Length adjustment: 8
Effective length of query: 183
Effective length of database: 583
Effective search space:   106689
Effective search space used:   106689
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)